SMTL ID : 3pzr.1 (1 other biounit)

Crystals structure of aspartate beta-Semialdehyde dehydrogenase from Vibrio Cholerae with NADP and product of S-carbamoyl-L-cysteine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x CYS: CYSTEINE(Non-covalent)

CYS.1: 9 residues within 4Å: Chain A: N.133, C.134, Q.161, G.165, I.229, E.240, R.267, H.274, Q.350 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.133, A:Q.161, A:E.240 Salt bridges: A:R.267, A:H.274 CYS.4: 9 residues within 4Å: Chain B: N.133, C.134, Q.161, G.165, I.229, E.240, R.267, H.274, Q.350 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.133, B:Q.161, B:E.240 Salt bridges: B:R.267, B:H.274

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 11 residues within 4Å: Chain A: G.7, R.9, G.10, M.11, V.12, S.35, T.36, S.37, C.71, Q.72, G.73 23 PLIP interactions: 22 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.7, A:R.9, A:R.9, A:G.10, A:M.11, A:V.12, A:T.36, A:T.36, A:T.36, A:S.37 Water bridges: A:G.7, A:W.8, A:R.9, A:R.9, A:G.13, A:S.37, A:Q.72, A:Q.72, A:G.74, A:G.74, B:S.194 Salt bridges: A:R.9 pi-Cation interactions: A:R.9 NAP.5: 11 residues within 4Å: Chain B: G.7, R.9, G.10, M.11, V.12, S.35, T.36, S.37, C.71, Q.72, G.73 22 PLIP interactions: 1 interactions with chain A, 21 interactions with chain B Water bridges: A:S.194, B:G.7, B:W.8, B:R.9, B:R.9, B:G.13, B:T.36, B:S.37, B:Q.72, B:G.74, B:G.74 Hydrogen bonds: B:G.7, B:R.9, B:R.9, B:G.10, B:M.11, B:V.12, B:T.36, B:T.36, B:S.37 Salt bridges: B:R.9 pi-Cation interactions: B:R.9

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: G.210, F.212, T.214 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.210, A:T.214 NA.6: 3 residues within 4Å: Chain B: G.210, F.212, T.214 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.214, B:T.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pavlovsky, A.G. et al., Structural Characterization of Inhibitors with Selectivity against Members of a Homologous Enzyme Family. Chem.Biol.Drug Des. (2012)

Release Date

2012-01-04

Peptides

Aspartate-semialdehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Aspartate-semialdehyde dehydrogenase

Related Entries With Identical Sequence