SMTL ID : 1mji.1

DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: C.13, A.14, C.22, U.23 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain B: C.13, A.14, C.22, U.23 No protein-ligand interaction detected (PLIP) MG.5: 5 residues within 4Å: Chain C: R.128, G.129, N.130, T.161, A.163 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:R.128, C:T.161, C:A.163 MG.6: 5 residues within 4Å: Chain D: R.128, G.129, N.130, T.161, A.163 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:R.128, D:T.161, D:A.163, H2O.6

2 x K: POTASSIUM ION(Non-functional Binders)

K.2: 2 residues within 4Å: Chain A: U.7, G.8 No protein-ligand interaction detected (PLIP) K.4: 2 residues within 4Å: Chain B: U.7, G.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perederina, A. et al., Detailed analysis of RNA-protein interactions within the bacterial ribosomalprotein L5/5S rRNA complex. RNA (2002)

Release Date

2003-01-21

Peptides

50S ribosomal protein L5: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

50S ribosomal protein L5

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