SMTL ID : 5ndk.2 (1 other biounit)

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.95 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
800 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
2 x 8UZ: TC007(Non-functional Binders)
3 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Prokhorova, I. et al., Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A. (2017)
Release Date
2017-12-13
Peptides
50S ribosomal protein L23: A
50S ribosomal protein L34: B
30S ribosomal protein S11: C
30S ribosomal protein S3: D
50S ribosomal protein L18: F
50S ribosomal protein L2: G
30S ribosomal protein S17: H
30S ribosomal protein S9: I
50S ribosomal protein L13: J
50S ribosomal protein L24: K
50S ribosomal protein L35: L
30S ribosomal protein S12: M
30S ribosomal protein S4: N
50S ribosomal protein L19: P
50S ribosomal protein L30: Q
50S ribosomal protein L9: R
30S ribosomal protein S18: S
30S ribosomal protein Thx: T
50S ribosomal protein L14: U
50S ribosomal protein L25: V
50S ribosomal protein L3: W
30S ribosomal protein S13: X
30S ribosomal protein S5: Y
50S ribosomal protein L20: 0
50S ribosomal protein L31: 1
30S ribosomal protein S19: 2
50S ribosomal protein L15: 3
50S ribosomal protein L27: 4
50S ribosomal protein L4: 5
30S ribosomal protein S14 type Z: 6
30S ribosomal protein S6: 7
50S ribosomal protein L21: 8
50S ribosomal protein L32: 9
30S ribosomal protein S20: a
50S ribosomal protein L16: b
50S ribosomal protein L28: c
50S ribosomal protein L5: d
30S ribosomal protein S15: e
30S ribosomal protein S7: f
50S ribosomal protein L22: g
30S ribosomal protein S10: h
30S ribosomal protein S2: i
50S ribosomal protein L17: j
50S ribosomal protein L29: k
50S ribosomal protein L6: l
30S ribosomal protein S16: m
30S ribosomal protein S8: n
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B5
B
L5
C
2A
D
22
F
65
G
19
H
8A
I
82
J
15
K
C5
L
M5
M
3A
N
32
P
75
Q
H5
R
69
S
9A
T
1B
U
25
V
D5
W
29
X
4A
Y
42
0
85
1
I5
2
AA
3
35
4
E5
5
39
6
5A
7
52
8
95
9
J5
a
BA
b
45
c
F5
d
49
e
6A
f
62
g
A5
h
1A
i
12
j
55
k
G5
l
59
m
7A
n
72

50S ribosomal protein L23

50S ribosomal protein L34

30S ribosomal protein S11

30S ribosomal protein S3

50S ribosomal protein L18

50S ribosomal protein L2

30S ribosomal protein S17

30S ribosomal protein S9

50S ribosomal protein L13

50S ribosomal protein L24

50S ribosomal protein L35

30S ribosomal protein S12

30S ribosomal protein S4

50S ribosomal protein L19

50S ribosomal protein L30

50S ribosomal protein L9

30S ribosomal protein S18

30S ribosomal protein Thx

50S ribosomal protein L14

50S ribosomal protein L25

50S ribosomal protein L3

30S ribosomal protein S13

30S ribosomal protein S5

50S ribosomal protein L20

50S ribosomal protein L31

30S ribosomal protein S19

50S ribosomal protein L15

50S ribosomal protein L27

50S ribosomal protein L4

30S ribosomal protein S14 type Z

30S ribosomal protein S6

50S ribosomal protein L21

50S ribosomal protein L32

30S ribosomal protein S20

50S ribosomal protein L16

50S ribosomal protein L28

50S ribosomal protein L5

30S ribosomal protein S15

30S ribosomal protein S7

50S ribosomal protein L22

30S ribosomal protein S10

30S ribosomal protein S2

50S ribosomal protein L17

50S ribosomal protein L29

50S ribosomal protein L6

30S ribosomal protein S16

30S ribosomal protein S8

Related Entries With Identical Sequence

1bxe.1 | 1bxy.1 | 1bxy.2 | 1emw.1 | 1fjg.1 | 1fka.1 | 1gd8.1 | 1gd8.2 | 1gd8.3 | 1gd8.4 | 1gd8.5 | 1gd8.6 | 1gd8.7 | 1gd8.8 | 1gd8.9 | 1hnw.1 | 1hnx.1 | 1hnz.1 | 1hr0.1 | 1i94.1 | 1ibk.1 | 1ibl.1 | 1ibm.1 | 1j5e.1 | 1mji.1 | 1n32.1 | 1n33.1 | 1n34.1 | 1n36.1 | 1n88.1  more...