SMTL ID : 8ud7.2 (1 other biounit)

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

MG.1: 4 residues within 4Å: Chain A: G.1259, G.1260, U.1279, G.1280 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain A: G.1853 Ligands: MG.467 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain A: C.435, G.436 No protein-ligand interaction detected (PLIP) MG.4: 4 residues within 4Å: Chain A: G.214, C.435, G.436 Ligands: MG.17 No protein-ligand interaction detected (PLIP) MG.5: 5 residues within 4Å: Chain A: C.1962, C.1963, U.1964, U.1965 Ligands: MG.67 No protein-ligand interaction detected (PLIP) MG.6: 5 residues within 4Å: Chain A: G.1956, A.1957, U.1961, C.1982, C.1983 No protein-ligand interaction detected (PLIP) MG.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.8: 6 residues within 4Å: Chain A: G.2536, G.2537, C.2538, G.2547, U.2548, C.2549 No protein-ligand interaction detected (PLIP) MG.9: 4 residues within 4Å: Chain A: G.1697, A.1698, C.2027, A.2832 No protein-ligand interaction detected (PLIP) MG.10: 4 residues within 4Å: Chain A: G.1344, U.1345, G.1672, G.1673 No protein-ligand interaction detected (PLIP) MG.11: 5 residues within 4Å: Chain A: A.2464, U.2517, A.2583, C.2584 Chain D: R.144 No protein-ligand interaction detected (PLIP) MG.12: 4 residues within 4Å: Chain A: A.183, A.184, A.185 Ligands: MG.580 No protein-ligand interaction detected (PLIP) MG.13: 3 residues within 4Å: Chain A: G.2336, G.2395, C.2396 No protein-ligand interaction detected (PLIP) MG.14: 1 residues within 4Å: Chain A: C.1834 No protein-ligand interaction detected (PLIP) MG.15: 4 residues within 4Å: Chain A: G.1316, A.1317, U.1318 Ligands: MG.558 No protein-ligand interaction detected (PLIP) MG.16: 5 residues within 4Å: Chain A: C.724, G.822, A.839, A.2092, G.2093 No protein-ligand interaction detected (PLIP) MG.17: 6 residues within 4Å: Chain A: G.212, A.213, G.434, C.445, C.446 Ligands: MG.4 No protein-ligand interaction detected (PLIP) MG.18: 5 residues within 4Å: Chain A: A.2450, C.2451, A.2611 Chain C: E.237 Ligands: MG.699 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.237, H2O.11 MG.19: 4 residues within 4Å: Chain A: U.1809, A.1813, A.1814 Ligands: MG.648 No protein-ligand interaction detected (PLIP) MG.20: 2 residues within 4Å: Chain A: G.283, G.384 No protein-ligand interaction detected (PLIP) MG.21: 2 residues within 4Å: Chain A: G.2058, G.2059 No protein-ligand interaction detected (PLIP) MG.22: 3 residues within 4Å: Chain A: G.988, A.989 Ligands: MG.577 No protein-ligand interaction detected (PLIP) MG.23: 4 residues within 4Å: Chain A: G.1707, G.2021, U.2699, U.2700 No protein-ligand interaction detected (PLIP) MG.24: 5 residues within 4Å: Chain A: U.1439, A.1440, U.1442, U.1647, A.1648 No protein-ligand interaction detected (PLIP) MG.25: 5 residues within 4Å: Chain A: C.2562, U.2563, U.2566, C.2567, G.2568 No protein-ligand interaction detected (PLIP) MG.26: 4 residues within 4Å: Chain A: G.1526, U.1527, G.1557 Ligands: MG.238 No protein-ligand interaction detected (PLIP) MG.27: 3 residues within 4Å: Chain A: U.610, A.716, C.717 No protein-ligand interaction detected (PLIP) MG.28: 3 residues within 4Å: Chain A: U.24, G.25, G.26 No protein-ligand interaction detected (PLIP) MG.29: 3 residues within 4Å: Chain A: A.1423, G.1425, G.1426 No protein-ligand interaction detected (PLIP) MG.30: 2 residues within 4Å: Chain A: A.192, G.193 No protein-ligand interaction detected (PLIP) MG.31: 5 residues within 4Å: Chain A: U.409, A.416, G.417, C.418, G.437 No protein-ligand interaction detected (PLIP) MG.32: 3 residues within 4Å: Chain A: C.180, U.181, U.190 No protein-ligand interaction detected (PLIP) MG.33: 3 residues within 4Å: Chain A: U.2255, U.2256, A.2441 No protein-ligand interaction detected (PLIP) MG.34: 5 residues within 4Å: Chain A: U.873, A.2437, C.2438, G.2440 Ligands: MG.177 No protein-ligand interaction detected (PLIP) MG.35: 2 residues within 4Å: Chain A: G.978, C.979 No protein-ligand interaction detected (PLIP) MG.36: 5 residues within 4Å: Chain A: C.1014, C.1015, G.1018, A.1033, G.1034 No protein-ligand interaction detected (PLIP) MG.37: 2 residues within 4Å: Chain A: G.488, U.489 No protein-ligand interaction detected (PLIP) MG.38: 2 residues within 4Å: Chain A: G.349 Ligands: MG.619 No protein-ligand interaction detected (PLIP) MG.39: 1 residues within 4Å: Chain A: A.337 No protein-ligand interaction detected (PLIP) MG.40: 2 residues within 4Å: Chain A: U.2626, C.2627 No protein-ligand interaction detected (PLIP) MG.41: 2 residues within 4Å: Chain A: G.1887, G.1888 No protein-ligand interaction detected (PLIP) MG.42: 5 residues within 4Å: Chain A: G.1519, C.1520, G.1564, U.1565, G.1566 No protein-ligand interaction detected (PLIP) MG.43: 2 residues within 4Å: Chain A: G.1511, G.1512 No protein-ligand interaction detected (PLIP) MG.44: 1 residues within 4Å: Chain A: G.2696 No protein-ligand interaction detected (PLIP) MG.45: 3 residues within 4Å: Chain A: A.589, G.2458 Ligands: MG.628 No protein-ligand interaction detected (PLIP) MG.46: 3 residues within 4Å: Chain A: G.757, G.758, C.765 No protein-ligand interaction detected (PLIP) MG.47: 4 residues within 4Å: Chain A: A.529, C.534, U.535, G.1281 No protein-ligand interaction detected (PLIP) MG.48: 2 residues within 4Å: Chain A: G.364 Ligands: MG.629 No protein-ligand interaction detected (PLIP) MG.49: 3 residues within 4Å: Chain A: A.334, A.353, A.354 No protein-ligand interaction detected (PLIP) MG.50: 4 residues within 4Å: Chain A: U.1871, G.1872, C.1914 Ligands: MG.259 No protein-ligand interaction detected (PLIP) MG.51: 2 residues within 4Å: Chain A: G.432, G.433 No protein-ligand interaction detected (PLIP) MG.52: 2 residues within 4Å: Chain A: G.2773, G.2774 No protein-ligand interaction detected (PLIP) MG.53: 4 residues within 4Å: Chain A: A.37, G.464, G.465 Ligands: MG.515 No protein-ligand interaction detected (PLIP) MG.54: 2 residues within 4Å: Chain A: A.13, G.14 No protein-ligand interaction detected (PLIP) MG.55: 5 residues within 4Å: Chain A: G.1067, U.1068, G.1069, G.1070 Ligands: MG.680 No protein-ligand interaction detected (PLIP) MG.56: 4 residues within 4Å: Chain A: A.1171, C.2475, C.2476, G.2497 No protein-ligand interaction detected (PLIP) MG.57: 4 residues within 4Å: Chain A: C.836, C.1811 Ligands: MG.213, MG.215 No protein-ligand interaction detected (PLIP) MG.58: 4 residues within 4Å: Chain A: C.665, G.666 Ligands: MG.59, MG.332 No protein-ligand interaction detected (PLIP) MG.59: 2 residues within 4Å: Chain A: G.666 Ligands: MG.58 No protein-ligand interaction detected (PLIP) MG.60: 1 residues within 4Å: Chain A: A.306 No protein-ligand interaction detected (PLIP) MG.61: 1 residues within 4Å: Chain A: G.1837 No protein-ligand interaction detected (PLIP) MG.62: 3 residues within 4Å: Chain A: G.432, G.433, U.447 No protein-ligand interaction detected (PLIP) MG.63: 2 residues within 4Å: Chain A: U.1312, C.2029 No protein-ligand interaction detected (PLIP) MG.64: 2 residues within 4Å: Chain A: G.1316, G.1370 No protein-ligand interaction detected (PLIP) MG.65: 5 residues within 4Å: Chain A: A.997, G.998, U.2276, A.2277, A.2284 No protein-ligand interaction detected (PLIP) MG.66: 3 residues within 4Å: Chain A: U.1397, A.1398, A.1616 No protein-ligand interaction detected (PLIP) MG.67: 5 residues within 4Å: Chain A: U.1961, C.1962, C.1963, U.1964 Ligands: MG.5 No protein-ligand interaction detected (PLIP) MG.68: 4 residues within 4Å: Chain A: U.2647, U.2648, G.2649, A.2788 No protein-ligand interaction detected (PLIP) MG.69: 1 residues within 4Å: Chain A: U.447 No protein-ligand interaction detected (PLIP) MG.70: 3 residues within 4Å: Chain A: A.731, U.819, A.820 No protein-ligand interaction detected (PLIP) MG.71: 3 residues within 4Å: Chain A: A.2081, G.2456 Chain E: R.74 No protein-ligand interaction detected (PLIP) MG.72: 4 residues within 4Å: Chain A: G.1720, C.2009, G.2010, C.2011 No protein-ligand interaction detected (PLIP) MG.73: 7 residues within 4Å: Chain A: A.597, U.598, U.2511, C.2512, A.2514, U.2515 Ligands: MG.553 No protein-ligand interaction detected (PLIP) MG.74: 3 residues within 4Å: Chain A: C.795, A.1314 Ligands: MG.602 No protein-ligand interaction detected (PLIP) MG.75: 2 residues within 4Å: Chain A: G.407, G.408 No protein-ligand interaction detected (PLIP) MG.76: 4 residues within 4Å: Chain A: C.1005, A.2052, G.2466, C.2467 No protein-ligand interaction detected (PLIP) MG.77: 2 residues within 4Å: Chain A: G.1487, G.1488 No protein-ligand interaction detected (PLIP) MG.78: 4 residues within 4Å: Chain A: G.1699, G.2023, G.2024 Chain M: N.11 No protein-ligand interaction detected (PLIP) MG.79: 4 residues within 4Å: Chain A: C.1955, G.1956, C.1995, G.1996 No protein-ligand interaction detected (PLIP) MG.80: 2 residues within 4Å: Chain A: U.1960, C.1995 No protein-ligand interaction detected (PLIP) MG.81: 3 residues within 4Å: Chain A: C.725, A.2252, G.2253 No protein-ligand interaction detected (PLIP) MG.82: 2 residues within 4Å: Chain A: C.2086, C.2087 No protein-ligand interaction detected (PLIP) MG.83: 2 residues within 4Å: Chain A: U.819, A.820 No protein-ligand interaction detected (PLIP) MG.84: 3 residues within 4Å: Chain A: C.800, G.1664, G.1665 No protein-ligand interaction detected (PLIP) MG.85: 2 residues within 4Å: Chain A: U.2664, G.2666 No protein-ligand interaction detected (PLIP) MG.86: 3 residues within 4Å: Chain A: G.1743, A.1744 Ligands: MG.637 No protein-ligand interaction detected (PLIP) MG.87: 3 residues within 4Å: Chain A: A.1815, A.1816, C.2003 No protein-ligand interaction detected (PLIP) MG.88: 4 residues within 4Å: Chain A: G.1720, G.1724, G.1794, G.2010 No protein-ligand interaction detected (PLIP) MG.89: 6 residues within 4Å: Chain A: A.185, C.186, G.2090, G.2091, U.2255 Ligands: MG.375 No protein-ligand interaction detected (PLIP) MG.90: 5 residues within 4Å: Chain A: C.587, U.588, U.598, G.599, G.855 No protein-ligand interaction detected (PLIP) MG.91: 2 residues within 4Å: Chain A: G.1276, G.1277 No protein-ligand interaction detected (PLIP) MG.92: 3 residues within 4Å: Chain A: C.1058, U.1059, A.1188 No protein-ligand interaction detected (PLIP) MG.93: 4 residues within 4Å: Chain A: U.885, G.982, G.983, G.984 No protein-ligand interaction detected (PLIP) MG.94: 5 residues within 4Å: Chain A: U.2698, U.2699, U.2732, A.2733, G.2734 No protein-ligand interaction detected (PLIP) MG.95: 3 residues within 4Å: Chain A: G.2679, G.2680 Ligands: MG.96 No protein-ligand interaction detected (PLIP) MG.96: 3 residues within 4Å: Chain A: G.2679, G.2680 Ligands: MG.95 No protein-ligand interaction detected (PLIP) MG.97: 1 residues within 4Å: Chain A: G.2495 No protein-ligand interaction detected (PLIP) MG.98: 3 residues within 4Å: Chain A: G.2458, A.2459 Ligands: MG.724 No protein-ligand interaction detected (PLIP) MG.99: 2 residues within 4Å: Chain A: U.1752, G.1753 No protein-ligand interaction detected (PLIP) MG.100: 2 residues within 4Å: Chain A: C.2485, C.2486 No protein-ligand interaction detected (PLIP) MG.101: 4 residues within 4Å: Chain A: G.2848, G.2886, U.2887 Ligands: MG.550 No protein-ligand interaction detected (PLIP) MG.102: 3 residues within 4Å: Chain A: U.1358, C.1359, C.1360 No protein-ligand interaction detected (PLIP) MG.103: 3 residues within 4Å: Chain A: G.477, C.478, A.496 No protein-ligand interaction detected (PLIP) MG.104: 2 residues within 4Å: Chain A: G.1458, G.1459 No protein-ligand interaction detected (PLIP) MG.105: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.106: 5 residues within 4Å: Chain A: G.662, U.663, G.672, G.673, C.674 No protein-ligand interaction detected (PLIP) MG.107: 2 residues within 4Å: Chain A: G.246, G.247 No protein-ligand interaction detected (PLIP) MG.108: 4 residues within 4Å: Chain A: A.455, G.456, U.457 Ligands: MG.716 No protein-ligand interaction detected (PLIP) MG.109: 2 residues within 4Å: Chain A: C.2657, A.2745 No protein-ligand interaction detected (PLIP) MG.110: 3 residues within 4Å: Chain A: U.628, U.629, G.644 No protein-ligand interaction detected (PLIP) MG.111: 2 residues within 4Å: Chain A: A.2459, U.2460 No protein-ligand interaction detected (PLIP) MG.112: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.113: 4 residues within 4Å: Chain A: U.2043, G.2074, C.2627, C.2628 No protein-ligand interaction detected (PLIP) MG.114: 5 residues within 4Å: Chain A: C.818, G.1401 Chain C: N.45, Q.46, G.47 No protein-ligand interaction detected (PLIP) MG.115: 3 residues within 4Å: Chain A: A.552, A.553 Ligands: MG.227 No protein-ligand interaction detected (PLIP) MG.116: 3 residues within 4Å: Chain A: C.778, G.805, G.806 No protein-ligand interaction detected (PLIP) MG.117: 2 residues within 4Å: Chain A: G.276, G.277 No protein-ligand interaction detected (PLIP) MG.118: 3 residues within 4Å: Chain A: C.1682, A.1683, A.1790 No protein-ligand interaction detected (PLIP) MG.119: 5 residues within 4Å: Chain A: C.134, G.135, G.137, A.138, C.140 No protein-ligand interaction detected (PLIP) MG.120: 2 residues within 4Å: Chain A: G.135, G.137 No protein-ligand interaction detected (PLIP) MG.121: 2 residues within 4Å: Chain A: G.2111, U.2112 No protein-ligand interaction detected (PLIP) MG.122: 4 residues within 4Å: Chain A: C.1015, G.1016, A.1017, G.1018 No protein-ligand interaction detected (PLIP) MG.123: 6 residues within 4Å: Chain A: G.605, A.1298, G.1301, C.1302 Ligands: MG.446, MG.725 No protein-ligand interaction detected (PLIP) MG.124: 3 residues within 4Å: Chain A: G.715, G.847, U.849 No protein-ligand interaction detected (PLIP) MG.125: 2 residues within 4Å: Chain A: C.1169, G.1170 No protein-ligand interaction detected (PLIP) MG.126: 3 residues within 4Å: Chain A: A.1934, U.1936 Ligands: MG.730 No protein-ligand interaction detected (PLIP) MG.127: 3 residues within 4Å: Chain A: G.1328, G.1330, U.1374 No protein-ligand interaction detected (PLIP) MG.128: 4 residues within 4Å: Chain A: G.2261, G.2262, C.2507, A.2508 No protein-ligand interaction detected (PLIP) MG.129: 1 residues within 4Å: Chain A: G.2261 No protein-ligand interaction detected (PLIP) MG.130: 2 residues within 4Å: Chain A: G.1468 Ligands: MG.382 No protein-ligand interaction detected (PLIP) MG.131: 2 residues within 4Å: Chain A: U.1807, U.1808 No protein-ligand interaction detected (PLIP) MG.132: 5 residues within 4Å: Chain A: U.489, G.490, G.730, A.834, G.840 No protein-ligand interaction detected (PLIP) MG.133: 3 residues within 4Å: Chain A: U.257, G.282, G.283 No protein-ligand interaction detected (PLIP) MG.134: 4 residues within 4Å: Chain A: C.2518, C.2584, G.2585, C.2586 No protein-ligand interaction detected (PLIP) MG.135: 2 residues within 4Å: Chain A: G.1606, G.1607 No protein-ligand interaction detected (PLIP) MG.136: 4 residues within 4Å: Chain A: A.721, A.848, U.849 Ligands: MG.254 No protein-ligand interaction detected (PLIP) MG.137: 5 residues within 4Å: Chain A: A.1715, C.1716, U.1717, G.2561, C.2562 No protein-ligand interaction detected (PLIP) MG.138: 3 residues within 4Å: Chain A: U.2100, G.2101, G.2249 No protein-ligand interaction detected (PLIP) MG.139: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.140: 2 residues within 4Å: Chain A: G.132, G.133 No protein-ligand interaction detected (PLIP) MG.141: 1 residues within 4Å: Chain A: A.1790 No protein-ligand interaction detected (PLIP) MG.142: 4 residues within 4Å: Chain A: C.533, C.534, U.535, G.536 No protein-ligand interaction detected (PLIP) MG.143: 4 residues within 4Å: Chain A: U.1960, A.1987, C.1988, G.2603 No protein-ligand interaction detected (PLIP) MG.144: 2 residues within 4Å: Chain A: A.1484, C.1514 No protein-ligand interaction detected (PLIP) MG.145: 4 residues within 4Å: Chain A: A.392, C.393, C.394, C.430 No protein-ligand interaction detected (PLIP) MG.146: 3 residues within 4Å: