- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.57 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLP: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 5 residues within 4Å:- Chain A: N.283, L.286, E.287, F.313, M.319
1 PLIP interactions:1 interactions with chain A- Water bridges: A:V.314
SO4.3: 6 residues within 4Å:- Chain A: E.18, N.21, A.22, N.25, N.152, A.153
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.18, A:N.25
- Water bridges: A:N.21
- Salt bridges: A:K.163
SO4.4: 5 residues within 4Å:- Chain A: H.225, H.226
- Chain B: H.225, H.226
- Ligands: SO4.13
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Water bridges: B:H.226
- Salt bridges: B:H.225, B:H.226, A:H.225, A:H.226
SO4.5: 3 residues within 4Å:- Chain A: A.362, K.363, S.364
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.363, A:S.364
SO4.6: 3 residues within 4Å:- Chain A: Y.8, Y.17, E.18
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:Y.8
- Water bridges: A:Y.17, A:E.18, A:N.21, A:N.21, A:N.21, A:N.21
SO4.11: 5 residues within 4Å:- Chain B: N.283, L.286, E.287, F.313, M.319
1 PLIP interactions:1 interactions with chain B- Water bridges: B:V.314
SO4.12: 6 residues within 4Å:- Chain B: E.18, N.21, A.22, N.25, N.152, A.153
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.18, B:N.25
- Water bridges: B:N.21
- Salt bridges: B:K.163
SO4.13: 5 residues within 4Å:- Chain A: H.225, H.226
- Chain B: H.225, H.226
- Ligands: SO4.4
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Salt bridges: B:H.225, B:H.226, A:H.225, A:H.226
- Water bridges: A:H.226
SO4.14: 3 residues within 4Å:- Chain B: A.362, K.363, S.364
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.363, B:S.364
SO4.15: 3 residues within 4Å:- Chain B: Y.8, Y.17, E.18
6 PLIP interactions:6 interactions with chain B- Water bridges: B:Y.8, B:Y.17, B:N.21, B:N.21, B:N.21, B:N.21
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.7: 2 residues within 4Å:- Chain A: D.234
- Ligands: MES.8
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.234
- Water bridges: A:D.234, A:D.234
NA.16: 2 residues within 4Å:- Chain B: D.234
- Ligands: MES.17
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.234
- Water bridges: B:D.234, B:D.234
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.8: 5 residues within 4Å:- Chain A: A.280, N.282, E.329, A.332
- Ligands: NA.7
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.282, A:E.329
- Water bridges: A:N.282, A:D.308, A:V.327, A:E.329
MES.17: 5 residues within 4Å:- Chain B: A.280, N.282, E.329, A.332
- Ligands: NA.16
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.282, B:E.329
- Water bridges: B:N.282, B:D.308, B:V.327, B:E.329
- 2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
MRD.9: 8 residues within 4Å:- Chain A: I.86, L.240
- Chain B: Y.236, A.256, Y.257, A.258, E.261
- Ligands: MRD.18
9 PLIP interactions:2 interactions with chain A, 7 interactions with chain B- Hydrophobic interactions: A:I.86, A:L.240, B:Y.257, B:Y.257, B:E.261
- Hydrogen bonds: B:Y.236, B:Y.236, B:A.258
- Water bridges: B:A.256
MRD.18: 8 residues within 4Å:- Chain A: Y.236, A.256, Y.257, A.258, E.261
- Chain B: I.86, L.240
- Ligands: MRD.9
8 PLIP interactions:6 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:Y.257, A:Y.257, A:E.261, B:I.86, B:L.240
- Hydrogen bonds: A:Y.236, A:A.258
- Water bridges: A:A.256
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Teplyakov, A. et al., Involvement of the C terminus in intramolecular nitrogen channeling in glucosamine 6-phosphate synthase: evidence from a 1.6 A crystal structure of the isomerase domain. Structure (1998)
- Release Date
- 1998-10-07
- Peptides
- GLUCOSAMINE 6-PHOSPHATE SYNTHASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.57 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLP: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Teplyakov, A. et al., Involvement of the C terminus in intramolecular nitrogen channeling in glucosamine 6-phosphate synthase: evidence from a 1.6 A crystal structure of the isomerase domain. Structure (1998)
- Release Date
- 1998-10-07
- Peptides
- GLUCOSAMINE 6-PHOSPHATE SYNTHASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A