SMTL ID : 1mqt.3 (4 other biounits)

Swine Vesicular Disease Virus coat protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x SPL: OCTANOIC ACID (2-HYDROXY-1-HYDROXYMETHYL-HEPTADEC-3-ENYL)-AMIDE(Non-covalent)

SPL.1: 23 residues within 4Å: Chain A: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain C: A.24 Chain G: Y.178 15 PLIP interactions: 13 interactions with chain A, 1 interactions with chain G, 1 interactions with chain C Hydrophobic interactions: A:I.94, A:F.114, A:L.116, A:L.118, A:Y.145, A:Y.145, A:Y.145, A:V.169, A:I.185, A:I.187, A:Y.191, A:L.212, G:Y.178, C:A.24 Hydrogen bonds: A:R.97 SPL.2: 22 residues within 4Å: Chain E: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain G: A.24 14 PLIP interactions: 13 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: E:I.94, E:F.114, E:L.116, E:L.118, E:Y.145, E:Y.145, E:Y.145, E:V.169, E:I.185, E:I.187, E:Y.191, E:L.212, G:A.24 Hydrogen bonds: E:R.97 SPL.3: 22 residues within 4Å: Chain I: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain K: A.24 14 PLIP interactions: 13 interactions with chain I, 1 interactions with chain K Hydrophobic interactions: I:I.94, I:F.114, I:L.116, I:L.118, I:Y.145, I:Y.145, I:Y.145, I:V.169, I:I.185, I:I.187, I:Y.191, I:L.212, K:A.24 Hydrogen bonds: I:R.97 SPL.4: 23 residues within 4Å: Chain K: Y.178 Chain M: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain O: A.24 15 PLIP interactions: 13 interactions with chain M, 1 interactions with chain K, 1 interactions with chain O Hydrophobic interactions: M:I.94, M:F.114, M:L.116, M:L.118, M:Y.145, M:Y.145, M:Y.145, M:V.169, M:I.185, M:I.187, M:Y.191, M:L.212, K:Y.178, O:A.24 Hydrogen bonds: M:R.97 SPL.5: 23 residues within 4Å: Chain Q: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain S: A.24 Chain W: Y.178 15 PLIP interactions: 13 interactions with chain Q, 1 interactions with chain W, 1 interactions with chain S Hydrophobic interactions: Q:I.94, Q:F.114, Q:L.116, Q:L.118, Q:Y.145, Q:Y.145, Q:Y.145, Q:V.169, Q:I.185, Q:I.187, Q:Y.191, Q:L.212, W:Y.178, S:A.24 Hydrogen bonds: Q:R.97 SPL.6: 22 residues within 4Å: Chain U: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain W: A.24 14 PLIP interactions: 13 interactions with chain U, 1 interactions with chain W Hydrophobic interactions: U:I.94, U:F.114, U:L.116, U:L.118, U:Y.145, U:Y.145, U:Y.145, U:V.169, U:I.185, U:I.187, U:Y.191, U:L.212, W:A.24 Hydrogen bonds: U:R.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verdaguer, N. et al., STRUCTURE OF SWINE VESICULAR DISEASE VIRUS: MAPPING OF CHANGES OCCURRING DURING ADAPTATION OF HUMAN COXSACKIE B5 VIRUS TO INFECT SWINE. J.Virol. (2003)

Release Date

2004-03-02

Peptides

Polyprotein: AEIMQU
Polyprotein Capsid Protein: BFJNRV
Polyprotein Capsid Protein: CGKOSW
Polyprotein Capsid Protein: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
B

F
B

J
B

N
B

R
B

V
B

C
C

G
C

K
C

O
C

S
C

W
C

D
D

H
D

L
D

P
D

T
D

X
D

Polyprotein

Polyprotein Capsid Protein

Polyprotein Capsid Protein

Polyprotein Capsid Protein

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