SMTL ID : 1mqt.5 (4 other biounits)

Swine Vesicular Disease Virus coat protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-15-15-15-15-mer

Ligands

15 x SPL: OCTANOIC ACID (2-HYDROXY-1-HYDROXYMETHYL-HEPTADEC-3-ENYL)-AMIDE(Non-covalent)

SPL.1: 23 residues within 4Å: Chain A: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain C: A.24 Chain G: Y.178 15 PLIP interactions: 13 interactions with chain A, 1 interactions with chain G, 1 interactions with chain C Hydrophobic interactions: A:I.94, A:F.114, A:L.116, A:L.118, A:Y.145, A:Y.145, A:Y.145, A:V.169, A:I.185, A:I.187, A:Y.191, A:L.212, G:Y.178, C:A.24 Hydrogen bonds: A:R.97 SPL.2: 23 residues within 4Å: Chain E: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain G: A.24 Chain K: Y.178 15 PLIP interactions: 13 interactions with chain E, 1 interactions with chain K, 1 interactions with chain G Hydrophobic interactions: E:I.94, E:F.114, E:L.116, E:L.118, E:Y.145, E:Y.145, E:Y.145, E:V.169, E:I.185, E:I.187, E:Y.191, E:L.212, K:Y.178, G:A.24 Hydrogen bonds: E:R.97 SPL.3: 23 residues within 4Å: Chain I: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain K: A.24 Chain O: Y.178 15 PLIP interactions: 13 interactions with chain I, 1 interactions with chain K, 1 interactions with chain O Hydrophobic interactions: I:I.94, I:F.114, I:L.116, I:L.118, I:Y.145, I:Y.145, I:Y.145, I:V.169, I:I.185, I:I.187, I:Y.191, I:L.212, K:A.24, O:Y.178 Hydrogen bonds: I:R.97 SPL.4: 23 residues within 4Å: Chain M: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain O: A.24 Chain S: Y.178 15 PLIP interactions: 13 interactions with chain M, 1 interactions with chain O, 1 interactions with chain S Hydrophobic interactions: M:I.94, M:F.114, M:L.116, M:L.118, M:Y.145, M:Y.145, M:Y.145, M:V.169, M:I.185, M:I.187, M:Y.191, M:L.212, O:A.24, S:Y.178 Hydrogen bonds: M:R.97 SPL.5: 23 residues within 4Å: Chain C: Y.178 Chain Q: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain S: A.24 15 PLIP interactions: 1 interactions with chain C, 13 interactions with chain Q, 1 interactions with chain S Hydrophobic interactions: C:Y.178, Q:I.94, Q:F.114, Q:L.116, Q:L.118, Q:Y.145, Q:Y.145, Q:Y.145, Q:V.169, Q:I.185, Q:I.187, Q:Y.191, Q:L.212, S:A.24 Hydrogen bonds: Q:R.97 SPL.6: 23 residues within 4Å: Chain 0: Y.178 Chain U: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain W: A.24 15 PLIP interactions: 13 interactions with chain U, 1 interactions with chain W, 1 interactions with chain 0 Hydrophobic interactions: U:I.94, U:F.114, U:L.116, U:L.118, U:Y.145, U:Y.145, U:Y.145, U:V.169, U:I.185, U:I.187, U:Y.191, U:L.212, W:A.24, 0:Y.178 Hydrogen bonds: U:R.97 SPL.7: 23 residues within 4Å: Chain 0: A.24 Chain 4: Y.178 Chain Y: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 15 PLIP interactions: 13 interactions with chain Y, 1 interactions with chain 0, 1 interactions with chain 4 Hydrophobic interactions: Y:I.94, Y:F.114, Y:L.116, Y:L.118, Y:Y.145, Y:Y.145, Y:Y.145, Y:V.169, Y:I.185, Y:I.187, Y:Y.191, Y:L.212, 0:A.24, 4:Y.178 Hydrogen bonds: Y:R.97 SPL.8: 23 residues within 4Å: Chain 2: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain 4: A.24 Chain 8: Y.178 15 PLIP interactions: 13 interactions with chain 2, 1 interactions with chain 4, 1 interactions with chain 8 Hydrophobic interactions: 2:I.94, 2:F.114, 2:L.116, 2:L.118, 2:Y.145, 2:Y.145, 2:Y.145, 2:V.169, 2:I.185, 2:I.187, 2:Y.191, 2:L.212, 4:A.24, 8:Y.178 Hydrogen bonds: 2:R.97 SPL.9: 23 residues within 4Å: Chain 6: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain 8: A.24 Chain c: Y.178 15 PLIP interactions: 13 interactions with chain 6, 1 interactions with chain 8, 1 interactions with chain c Hydrophobic interactions: 6:I.94, 6:F.114, 6:L.116, 6:L.118, 6:Y.145, 6:Y.145, 6:Y.145, 6:V.169, 6:I.185, 6:I.187, 6:Y.191, 6:L.212, 8:A.24, c:Y.178 Hydrogen bonds: 6:R.97 SPL.10: 23 residues within 4Å: Chain W: Y.178 Chain a: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain c: A.24 15 PLIP interactions: 13 interactions with chain a, 1 interactions with chain c, 1 interactions with chain W Hydrophobic interactions: a:I.94, a:F.114, a:L.116, a:L.118, a:Y.145, a:Y.145, a:Y.145, a:V.169, a:I.185, a:I.187, a:Y.191, a:L.212, c:A.24, W:Y.178 Hydrogen bonds: a:R.97 SPL.11: 23 residues within 4Å: Chain e: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain g: A.24 Chain k: Y.178 15 PLIP interactions: 13 interactions with chain e, 1 interactions with chain k, 1 interactions with chain g Hydrophobic interactions: e:I.94, e:F.114, e:L.116, e:L.118, e:Y.145, e:Y.145, e:Y.145, e:V.169, e:I.185, e:I.187, e:Y.191, e:L.212, k:Y.178, g:A.24 Hydrogen bonds: e:R.97 SPL.12: 23 residues within 4Å: Chain i: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain k: A.24 Chain o: Y.178 15 PLIP interactions: 1 interactions with chain k, 13 interactions with chain i, 1 interactions with chain o Hydrophobic interactions: k:A.24, i:I.94, i:F.114, i:L.116, i:L.118, i:Y.145, i:Y.145, i:Y.145, i:V.169, i:I.185, i:I.187, i:Y.191, i:L.212, o:Y.178 Hydrogen bonds: i:R.97 SPL.13: 23 residues within 4Å: Chain m: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain o: A.24 Chain s: Y.178 15 PLIP interactions: 13 interactions with chain m, 1 interactions with chain o, 1 interactions with chain s Hydrophobic interactions: m:I.94, m:F.114, m:L.116, m:L.118, m:Y.145, m:Y.145, m:Y.145, m:V.169, m:I.185, m:I.187, m:Y.191, m:L.212, o:A.24, s:Y.178 Hydrogen bonds: m:R.97 SPL.14: 23 residues within 4Å: Chain q: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain s: A.24 Chain w: Y.178 15 PLIP interactions: 13 interactions with chain q, 1 interactions with chain w, 1 interactions with chain s Hydrophobic interactions: q:I.94, q:F.114, q:L.116, q:L.118, q:Y.145, q:Y.145, q:Y.145, q:V.169, q:I.185, q:I.187, q:Y.191, q:L.212, w:Y.178, s:A.24 Hydrogen bonds: q:R.97 SPL.15: 23 residues within 4Å: Chain g: Y.178 Chain u: I.94, R.97, F.114, L.116, L.118, Y.145, S.168, V.169, M.180, I.182, I.185, G.186, I.187, Y.191, S.192, M.193, I.209, L.212, N.213, S.214, M.215 Chain w: A.24 15 PLIP interactions: 13 interactions with chain u, 1 interactions with chain w, 1 interactions with chain g Hydrophobic interactions: u:I.94, u:F.114, u:L.116, u:L.118, u:Y.145, u:Y.145, u:Y.145, u:V.169, u:I.185, u:I.187, u:Y.191, u:L.212, w:A.24, g:Y.178 Hydrogen bonds: u:R.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verdaguer, N. et al., STRUCTURE OF SWINE VESICULAR DISEASE VIRUS: MAPPING OF CHANGES OCCURRING DURING ADAPTATION OF HUMAN COXSACKIE B5 VIRUS TO INFECT SWINE. J.Virol. (2003)

Release Date

2004-03-02

Peptides

Polyprotein: AEIMQUY26aeimqu
Polyprotein Capsid Protein: BFJNRVZ37bfjnrv
Polyprotein Capsid Protein: CGKOSW048cgkosw
Polyprotein Capsid Protein: DHLPTX159dhlptx

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

Y
A

2
A

6
A

a
A

e
A

i
A

m
A

q
A

u
A

B
B

F
B

J
B

N
B

R
B

V
B

Z
B

3
B

7
B

b
B

f
B

j
B

n
B

r
B

v
B

C
C

G
C

K
C

O
C

S
C

W
C

0
C

4
C

8
C

c
C

g
C

k
C

o
C

s
C

w
C

D
D

H
D

L
D

P
D

T
D

X
D

1
D

5
D

9
D

d
D

h
D

l
D

p
D

t
D

x
D

Polyprotein

Polyprotein Capsid Protein

Polyprotein Capsid Protein

Polyprotein Capsid Protein

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