SMTL ID : 1mzc.1

Co-Crystal Structure Of Human Farnesyltransferase With Farnesyldiphosphate and Inhibitor Compound 33a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 12 residues within 4Å: Chain A: Y.241, G.282, Q.285, D.286 Chain B: A.230, R.231, Q.233, N.234, W.235, G.237, N.269, S.272 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.285, A:D.286, B:A.230, B:N.269, B:N.269, B:S.272, A:Y.241, A:G.282, A:Q.285, B:Q.233 Water bridges: A:D.286, A:D.286, B:W.235, B:G.244

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 Ligands: BNE.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.3: 14 residues within 4Å: Chain A: K.164, Y.166 Chain B: R.202, Y.205, H.248, G.250, Y.251, C.254, R.291, K.294, Y.300, W.303, Y.361 Ligands: BNE.4 20 PLIP interactions: 18 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.205, B:Y.251, B:W.303, B:W.303 Water bridges: B:G.290, B:R.291, B:R.291, B:R.291, B:K.294, B:K.294, B:K.294, B:K.294, B:Y.300, A:K.164 Salt bridges: B:H.248, B:R.291, B:R.291, B:K.294, B:K.294, A:K.164

1 x BNE: 2-[3-(3-ETHYL-1-METHYL-2-OXO-AZEPAN-3-YL)-PHENOXY]-4-[1-AMINO-1-(1-METHYL-1H-IMIDIZOL-5-YL)-ETHYL]-BENZONITRILE(Non-covalent)

BNE.4: 15 residues within 4Å: Chain A: Y.166 Chain B: L.96, S.99, W.102, W.106, A.151, R.202, D.297, C.299, Y.300, W.303, Y.361, H.362 Ligands: ZN.2, FPP.3 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.96, B:W.106, B:W.106, B:A.151, B:W.303, B:Y.361, A:Y.166 Hydrogen bonds: B:R.202 pi-Stacking: B:W.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DeSolms, S.J. et al., Dual Protein Farnesyltransferase-Geranylgeranyltransferase-I Inhibitors as Potential Cancer Chemotherapeutic Agents. J.Med.Chem. (2003)

Release Date

2003-07-08

Peptides

Protein Farnesyltransferase alpha Subunit: A
Protein Farnesyltransferase beta Subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein Farnesyltransferase alpha Subunit

Protein Farnesyltransferase beta Subunit

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