- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-24-mer
- Ligands
- 48 x FE2: FE (II) ION(Non-covalent)
- 78 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 5 residues within 4Å:- Chain A: K.50, S.162, S.163, T.164, G.165
Ligand excluded by PLIPSO4.4: 2 residues within 4Å:- Chain A: S.144, N.148
Ligand excluded by PLIPSO4.5: 5 residues within 4Å:- Chain A: K.114
- Chain I: K.114
- Chain Q: K.114
- Ligands: SO4.51, SO4.97
Ligand excluded by PLIPSO4.6: 3 residues within 4Å:- Chain A: P.161, S.162, S.163
Ligand excluded by PLIPSO4.10: 6 residues within 4Å:- Chain B: K.50, S.162, S.163, T.164, G.165
- Ligands: FEC.7
Ligand excluded by PLIPSO4.11: 3 residues within 4Å:- Chain B: S.144, K.147, N.148
Ligand excluded by PLIPSO4.12: 3 residues within 4Å:- Chain B: P.161, S.162, S.163
Ligand excluded by PLIPSO4.13: 2 residues within 4Å:- Chain C: K.114
- Chain W: K.114
Ligand excluded by PLIPSO4.16: 3 residues within 4Å:- Chain C: S.144, K.147, N.148
Ligand excluded by PLIPSO4.17: 3 residues within 4Å:- Chain C: P.161, S.162, S.163
Ligand excluded by PLIPSO4.21: 5 residues within 4Å:- Chain D: K.50, S.163, T.164, G.165
- Ligands: FEC.18
Ligand excluded by PLIPSO4.22: 2 residues within 4Å:- Chain D: N.4, R.5
Ligand excluded by PLIPSO4.23: 3 residues within 4Å:- Chain D: P.161, S.162, S.163
Ligand excluded by PLIPSO4.26: 4 residues within 4Å:- Chain E: K.50, S.163, T.164, G.165
Ligand excluded by PLIPSO4.27: 3 residues within 4Å:- Chain E: S.144, K.147, N.148
Ligand excluded by PLIPSO4.28: 3 residues within 4Å:- Chain E: P.161, S.162, S.163
Ligand excluded by PLIPSO4.31: 6 residues within 4Å:- Chain F: K.50, S.162, S.163, T.164, G.165
- Ligands: FEC.35
Ligand excluded by PLIPSO4.32: 2 residues within 4Å:- Chain F: N.4, R.5
Ligand excluded by PLIPSO4.33: 5 residues within 4Å:- Chain F: K.114
- Chain N: K.114
- Chain V: K.114
- Ligands: SO4.79, SO4.125
Ligand excluded by PLIPSO4.34: 3 residues within 4Å:- Chain F: P.161, S.162, S.163
Ligand excluded by PLIPSO4.38: 2 residues within 4Å:- Chain G: S.144, N.148
Ligand excluded by PLIPSO4.39: 3 residues within 4Å:- Chain G: P.161, S.162, S.163
Ligand excluded by PLIPSO4.40: 3 residues within 4Å:- Chain D: K.114
- Chain E: K.114
- Chain H: K.114
Ligand excluded by PLIPSO4.43: 5 residues within 4Å:- Chain H: K.50, S.163, T.164, G.165
- Ligands: FEC.46
Ligand excluded by PLIPSO4.44: 3 residues within 4Å:- Chain H: S.144, K.147, N.148
Ligand excluded by PLIPSO4.45: 3 residues within 4Å:- Chain H: P.161, S.162, S.163
Ligand excluded by PLIPSO4.49: 5 residues within 4Å:- Chain I: K.50, S.162, S.163, T.164, G.165
Ligand excluded by PLIPSO4.50: 2 residues within 4Å:- Chain I: S.144, N.148
Ligand excluded by PLIPSO4.51: 5 residues within 4Å:- Chain A: K.114
- Chain I: K.114
- Chain Q: K.114
- Ligands: SO4.5, SO4.97
Ligand excluded by PLIPSO4.52: 3 residues within 4Å:- Chain I: P.161, S.162, S.163
Ligand excluded by PLIPSO4.56: 6 residues within 4Å:- Chain J: K.50, S.162, S.163, T.164, G.165
- Ligands: FEC.53
Ligand excluded by PLIPSO4.57: 3 residues within 4Å:- Chain J: S.144, K.147, N.148
Ligand excluded by PLIPSO4.58: 3 residues within 4Å:- Chain J: P.161, S.162, S.163
Ligand excluded by PLIPSO4.59: 2 residues within 4Å:- Chain G: K.114
- Chain K: K.114
Ligand excluded by PLIPSO4.62: 3 residues within 4Å:- Chain K: S.144, K.147, N.148
Ligand excluded by PLIPSO4.63: 3 residues within 4Å:- Chain K: P.161, S.162, S.163
Ligand excluded by PLIPSO4.67: 5 residues within 4Å:- Chain L: K.50, S.163, T.164, G.165
- Ligands: FEC.64
Ligand excluded by PLIPSO4.68: 2 residues within 4Å:- Chain L: N.4, R.5
Ligand excluded by PLIPSO4.69: 3 residues within 4Å:- Chain L: P.161, S.162, S.163
Ligand excluded by PLIPSO4.72: 4 residues within 4Å:- Chain M: K.50, S.163, T.164, G.165
Ligand excluded by PLIPSO4.73: 3 residues within 4Å:- Chain M: S.144, K.147, N.148
Ligand excluded by PLIPSO4.74: 3 residues within 4Å:- Chain M: P.161, S.162, S.163
Ligand excluded by PLIPSO4.77: 6 residues within 4Å:- Chain N: K.50, S.162, S.163, T.164, G.165
- Ligands: FEC.81
Ligand excluded by PLIPSO4.78: 2 residues within 4Å:- Chain N: N.4, R.5
Ligand excluded by PLIPSO4.79: 5 residues within 4Å:- Chain F: K.114
- Chain N: K.114
- Chain V: K.114
- Ligands: SO4.33, SO4.125
Ligand excluded by PLIPSO4.80: 3 residues within 4Å:- Chain N: P.161, S.162, S.163
Ligand excluded by PLIPSO4.84: 2 residues within 4Å:- Chain O: S.144, N.148
Ligand excluded by PLIPSO4.85: 3 residues within 4Å:- Chain O: P.161, S.162, S.163
Ligand excluded by PLIPSO4.86: 3 residues within 4Å:- Chain L: K.114
- Chain M: K.114
- Chain P: K.114
Ligand excluded by PLIPSO4.89: 5 residues within 4Å:- Chain P: K.50, S.163, T.164, G.165
- Ligands: FEC.92
Ligand excluded by PLIPSO4.90: 3 residues within 4Å:- Chain P: S.144, K.147, N.148
Ligand excluded by PLIPSO4.91: 3 residues within 4Å:- Chain P: P.161, S.162, S.163
Ligand excluded by PLIPSO4.95: 5 residues within 4Å:- Chain Q: K.50, S.162, S.163, T.164, G.165
Ligand excluded by PLIPSO4.96: 2 residues within 4Å:- Chain Q: S.144, N.148
Ligand excluded by PLIPSO4.97: 5 residues within 4Å:- Chain A: K.114
- Chain I: K.114
- Chain Q: K.114
- Ligands: SO4.5, SO4.51
Ligand excluded by PLIPSO4.98: 3 residues within 4Å:- Chain Q: P.161, S.162, S.163
Ligand excluded by PLIPSO4.102: 6 residues within 4Å:- Chain R: K.50, S.162, S.163, T.164, G.165
- Ligands: FEC.99
Ligand excluded by PLIPSO4.103: 3 residues within 4Å:- Chain R: S.144, K.147, N.148
Ligand excluded by PLIPSO4.104: 3 residues within 4Å:- Chain R: P.161, S.162, S.163
Ligand excluded by PLIPSO4.105: 2 residues within 4Å:- Chain O: K.114
- Chain S: K.114
Ligand excluded by PLIPSO4.108: 3 residues within 4Å:- Chain S: S.144, K.147, N.148
Ligand excluded by PLIPSO4.109: 3 residues within 4Å:- Chain S: P.161, S.162, S.163
Ligand excluded by PLIPSO4.113: 5 residues within 4Å:- Chain T: K.50, S.163, T.164, G.165
- Ligands: FEC.110
Ligand excluded by PLIPSO4.114: 2 residues within 4Å:- Chain T: N.4, R.5
Ligand excluded by PLIPSO4.115: 3 residues within 4Å:- Chain T: P.161, S.162, S.163
Ligand excluded by PLIPSO4.118: 4 residues within 4Å:- Chain U: K.50, S.163, T.164, G.165
Ligand excluded by PLIPSO4.119: 3 residues within 4Å:- Chain U: S.144, K.147, N.148
Ligand excluded by PLIPSO4.120: 3 residues within 4Å:- Chain U: P.161, S.162, S.163
Ligand excluded by PLIPSO4.123: 6 residues within 4Å:- Chain V: K.50, S.162, S.163, T.164, G.165
- Ligands: FEC.127
Ligand excluded by PLIPSO4.124: 2 residues within 4Å:- Chain V: N.4, R.5
Ligand excluded by PLIPSO4.125: 5 residues within 4Å:- Chain F: K.114
- Chain N: K.114
- Chain V: K.114
- Ligands: SO4.33, SO4.79
Ligand excluded by PLIPSO4.126: 3 residues within 4Å:- Chain V: P.161, S.162, S.163
Ligand excluded by PLIPSO4.130: 2 residues within 4Å:- Chain W: S.144, N.148
Ligand excluded by PLIPSO4.131: 3 residues within 4Å:- Chain W: P.161, S.162, S.163
Ligand excluded by PLIPSO4.132: 3 residues within 4Å:- Chain T: K.114
- Chain U: K.114
- Chain X: K.114
Ligand excluded by PLIPSO4.135: 5 residues within 4Å:- Chain X: K.50, S.163, T.164, G.165
- Ligands: FEC.138
Ligand excluded by PLIPSO4.136: 3 residues within 4Å:- Chain X: S.144, K.147, N.148
Ligand excluded by PLIPSO4.137: 3 residues within 4Å:- Chain X: P.161, S.162, S.163
Ligand excluded by PLIP- 12 x FEC: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONIC ACID FERROUS COMPLEX(Non-covalent)
FEC.7: 22 residues within 4Å:- Chain A: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, M.57, R.58, E.61
- Chain B: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169
- Ligands: SO4.10
17 PLIP interactions:10 interactions with chain A, 7 interactions with chain B,- Hydrophobic interactions: A:L.24, A:I.27, A:M.31, A:R.58, A:E.61, B:I.27, B:M.31, B:E.61
- Hydrogen bonds: A:Y.35, A:R.58, B:S.168, B:K.169
- Water bridges: A:R.20
- Salt bridges: A:R.20, A:H.28, B:R.20, B:K.50
FEC.18: 23 residues within 4Å:- Chain C: R.20, L.24, H.28, M.31, Y.35, K.50, I.54, M.57, E.61, S.168, K.169
- Chain D: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169
- Ligands: SO4.21
17 PLIP interactions:9 interactions with chain D, 8 interactions with chain C,- Hydrophobic interactions: D:I.27, D:E.61, C:L.24, C:M.31, C:I.54, C:E.61
- Hydrogen bonds: D:S.168, D:S.168, D:K.169, C:Y.35, C:K.169
- Water bridges: D:T.164
- Salt bridges: D:R.20, D:H.28, D:K.50, C:R.20, C:H.28
FEC.35: 20 residues within 4Å:- Chain E: R.20, I.27, H.28, M.31, Y.35, K.50, I.54, M.57, E.61
- Chain F: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, S.168, K.169
- Ligands: SO4.31
18 PLIP interactions:10 interactions with chain F, 8 interactions with chain E,- Hydrophobic interactions: F:I.27, F:M.31, F:E.61, E:I.27, E:I.27, E:I.54, E:E.61
- Hydrogen bonds: F:Y.35, F:S.168, F:S.168, F:K.169, E:Y.35
- Water bridges: F:R.20, E:R.20
- Salt bridges: F:R.20, F:K.50, E:R.20, E:H.28
FEC.46: 23 residues within 4Å:- Chain G: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, I.54, M.57, E.61, S.168
- Chain H: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169
- Ligands: SO4.43
19 PLIP interactions:9 interactions with chain G, 10 interactions with chain H,- Hydrophobic interactions: G:L.24, G:I.27, G:M.31, G:I.54, G:M.57, G:E.61, H:I.27, H:M.31, H:E.61
- Hydrogen bonds: G:Y.35, H:S.168, H:S.168, H:K.169
- Salt bridges: G:R.20, G:H.28, H:R.20, H:K.50
- Water bridges: H:T.164, H:T.164
FEC.53: 22 residues within 4Å:- Chain I: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, M.57, R.58, E.61
- Chain J: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169
- Ligands: SO4.56
17 PLIP interactions:7 interactions with chain J, 10 interactions with chain I,- Hydrophobic interactions: J:I.27, J:M.31, J:E.61, I:L.24, I:I.27, I:M.31, I:R.58, I:E.61
- Hydrogen bonds: J:S.168, J:K.169, I:Y.35, I:R.58
- Salt bridges: J:R.20, J:K.50, I:R.20, I:H.28
- Water bridges: I:R.20
FEC.64: 23 residues within 4Å:- Chain K: R.20, L.24, H.28, M.31, Y.35, K.50, I.54, M.57, E.61, S.168, K.169
- Chain L: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169
- Ligands: SO4.67
17 PLIP interactions:9 interactions with chain L, 8 interactions with chain K,- Hydrophobic interactions: L:I.27, L:E.61, K:L.24, K:M.31, K:I.54, K:E.61
- Hydrogen bonds: L:Y.35, L:S.168, L:S.168, L:K.169, K:Y.35, K:K.169
- Salt bridges: L:R.20, L:H.28, L:K.50, K:R.20, K:H.28
FEC.81: 20 residues within 4Å:- Chain M: R.20, I.27, H.28, M.31, Y.35, K.50, I.54, M.57, E.61
- Chain N: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, S.168, K.169
- Ligands: SO4.77
19 PLIP interactions:9 interactions with chain M, 10 interactions with chain N,- Hydrophobic interactions: M:I.27, M:I.27, M:I.54, M:E.61, N:I.27, N:M.31, N:E.61
- Hydrogen bonds: M:Y.35, M:Y.35, N:Y.35, N:S.168, N:S.168, N:K.169
- Water bridges: M:R.20, N:R.20
- Salt bridges: M:R.20, M:H.28, N:R.20, N:K.50
FEC.92: 23 residues within 4Å:- Chain O: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, I.54, M.57, E.61, S.168
- Chain P: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169
- Ligands: SO4.89
19 PLIP interactions:9 interactions with chain P, 10 interactions with chain O,- Hydrophobic interactions: P:I.27, P:M.31, P:E.61, O:L.24, O:I.27, O:M.31, O:I.54, O:M.57, O:E.61
- Hydrogen bonds: P:Y.35, P:S.168, P:S.168, P:K.169, O:Y.35, O:Y.35
- Salt bridges: P:R.20, P:K.50, O:R.20, O:H.28
FEC.99: 22 residues within 4Å:- Chain Q: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, M.57, R.58, E.61
- Chain R: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169
- Ligands: SO4.102
18 PLIP interactions:10 interactions with chain Q, 8 interactions with chain R,- Hydrophobic interactions: Q:L.24, Q:I.27, Q:M.31, Q:R.58, Q:E.61, R:I.27, R:M.31, R:E.61
- Hydrogen bonds: Q:Y.35, Q:R.58, R:Y.35, R:S.168, R:K.169
- Water bridges: Q:R.20
- Salt bridges: Q:R.20, Q:H.28, R:R.20, R:K.50
FEC.110: 23 residues within 4Å:- Chain S: R.20, L.24, H.28, M.31, Y.35, K.50, I.54, M.57, E.61, S.168, K.169
- Chain T: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169
- Ligands: SO4.113
18 PLIP interactions:9 interactions with chain S, 9 interactions with chain T,- Hydrophobic interactions: S:L.24, S:M.31, S:I.54, S:E.61, T:I.27, T:E.61
- Hydrogen bonds: S:Y.35, S:Y.35, S:K.169, T:Y.35, T:S.168, T:S.168, T:K.169
- Salt bridges: S:R.20, S:H.28, T:R.20, T:H.28, T:K.50
FEC.127: 20 residues within 4Å:- Chain U: R.20, I.27, H.28, M.31, Y.35, K.50, I.54, M.57, E.61
- Chain V: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, S.168, K.169
- Ligands: SO4.123
19 PLIP interactions:10 interactions with chain V, 9 interactions with chain U,- Hydrophobic interactions: V:I.27, V:M.31, V:E.61, U:I.27, U:I.27, U:I.54, U:E.61
- Hydrogen bonds: V:Y.35, V:S.168, V:S.168, V:K.169, U:Y.35, U:Y.35
- Water bridges: V:R.20, U:R.20
- Salt bridges: V:R.20, V:K.50, U:R.20, U:H.28
FEC.138: 23 residues within 4Å:- Chain W: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, I.54, M.57, E.61, S.168
- Chain X: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169
- Ligands: SO4.135
18 PLIP interactions:9 interactions with chain W, 9 interactions with chain X,- Hydrophobic interactions: W:L.24, W:I.27, W:M.31, W:I.54, W:M.57, W:E.61, X:I.27, X:M.31, X:E.61
- Hydrogen bonds: W:Y.35, X:Y.35, X:S.168, X:S.168, X:K.169
- Salt bridges: W:R.20, W:H.28, X:R.20, X:K.50
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Macedo, S. et al., The nature of the di-iron site in the bacterioferritin fromDesulfovibrio desulfuricans. NAT.STRUCT.BIOL. (2003)
- Release Date
- 2003-04-01
- Peptides
- bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
ED
FE
KF
LG
OH
PI
CJ
DK
EL
FM
KN
LO
OP
PQ
CR
DS
ET
FU
KV
LW
OX
P
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-24-mer
- Ligands
- 48 x FE2: FE (II) ION(Non-covalent)
- 78 x SO4: SULFATE ION(Non-functional Binders)
- 12 x FEC: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONIC ACID FERROUS COMPLEX(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Macedo, S. et al., The nature of the di-iron site in the bacterioferritin fromDesulfovibrio desulfuricans. NAT.STRUCT.BIOL. (2003)
- Release Date
- 2003-04-01
- Peptides
- bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
ED
FE
KF
LG
OH
PI
CJ
DK
EL
FM
KN
LO
OP
PQ
CR
DS
ET
FU
KV
LW
OX
P