SMTL ID : 1nfv.1 (2 other biounits)

X-ray structure of Desulfovibrio desulfuricans bacterioferritin: the diiron centre in different catalytic states (as-isolated structure)

FE.1: 5 residues within 4Å: Chain A: E.23, E.56, H.59, E.132 Ligands: FE.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.23, A:E.23, A:E.56, A:H.59, A:E.132 FE.2: 5 residues within 4Å: Chain A: E.56, E.99, E.132, H.135 Ligands: FE.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.56, A:E.99, A:E.99, A:E.132, A:H.135 FE.10: 5 residues within 4Å: Chain B: E.23, E.56, H.59, E.132 Ligands: FE.11 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.23, B:E.23, B:E.56, B:H.59, B:E.132 FE.11: 5 residues within 4Å: Chain B: E.56, E.99, E.132, H.135 Ligands: FE.10 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.56, B:E.99, B:E.99, B:E.132, B:H.135 FE.18: 5 residues within 4Å: Chain C: E.23, E.56, H.59, E.132 Ligands: FE.19 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.23, C:E.23, C:E.56, C:H.59, C:E.132 FE.19: 5 residues within 4Å: Chain C: E.56, E.99, E.132, H.135 Ligands: FE.18 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.56, C:E.99, C:E.99, C:E.132, C:H.135 FE.24: 5 residues within 4Å: Chain D: E.23, E.56, H.59, E.132 Ligands: FE.25 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.23, D:E.23, D:E.56, D:H.59, D:E.132 FE.25: 5 residues within 4Å: Chain D: E.56, E.99, E.132, H.135 Ligands: FE.24 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.56, D:E.99, D:E.99, D:E.132, D:H.135 FE.32: 5 residues within 4Å: Chain E: E.23, E.56, H.59, E.132 Ligands: FE.33 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.23, E:E.23, E:E.56, E:H.59, E:E.132 FE.33: 5 residues within 4Å: Chain E: E.56, E.99, E.132, H.135 Ligands: FE.32 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.56, E:E.99, E:E.99, E:E.132, E:H.135 FE.38: 5 residues within 4Å: Chain F: E.23, E.56, H.59, E.132 Ligands: FE.39 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:E.23, F:E.23, F:E.56, F:H.59, F:E.132 FE.39: 5 residues within 4Å: Chain F: E.56, E.99, E.132, H.135 Ligands: FE.38 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:E.56, F:E.99, F:E.99, F:E.132, F:H.135 FE.46: 5 residues within 4Å: Chain G: E.23, E.56, H.59, E.132 Ligands: FE.47 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.23, G:E.23, G:E.56, G:H.59, G:E.132 FE.47: 5 residues within 4Å: Chain G: E.56, E.99, E.132, H.135 Ligands: FE.46 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.56, G:E.99, G:E.99, G:E.132, G:H.135 FE.54: 5 residues within 4Å: Chain H: E.23, E.56, H.59, E.132 Ligands: FE.55 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:E.23, H:E.23, H:E.56, H:H.59, H:E.132 FE.55: 5 residues within 4Å: Chain H: E.56, E.99, E.132, H.135 Ligands: FE.54 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:E.56, H:E.99, H:E.99, H:E.132, H:H.135 FE.61: 5 residues within 4Å: Chain I: E.23, E.56, H.59, E.132 Ligands: FE.62 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:E.23, I:E.23, I:E.56, I:H.59, I:E.132 FE.62: 5 residues within 4Å: Chain I: E.56, E.99, E.132, H.135 Ligands: FE.61 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:E.56, I:E.99, I:E.99, I:E.132, I:H.135 FE.70: 5 residues within 4Å: Chain J: E.23, E.56, H.59, E.132 Ligands: FE.71 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:E.23, J:E.23, J:E.56, J:H.59, J:E.132 FE.71: 5 residues within 4Å: Chain J: E.56, E.99, E.132, H.135 Ligands: FE.70 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:E.56, J:E.99, J:E.99, J:E.132, J:H.135 FE.78: 5 residues within 4Å: Chain K: E.23, E.56, H.59, E.132 Ligands: FE.79 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:E.23, K:E.23, K:E.56, K:H.59, K:E.132 FE.79: 5 residues within 4Å: Chain K: E.56, E.99, E.132, H.135 Ligands: FE.78 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:E.56, K:E.99, K:E.99, K:E.132, K:H.135 FE.84: 5 residues within 4Å: Chain L: E.23, E.56, H.59, E.132 Ligands: FE.85 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:E.23, L:E.23, L:E.56, L:H.59, L:E.132 FE.85: 5 residues within 4Å: Chain L: E.56, E.99, E.132, H.135 Ligands: FE.84 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:E.56, L:E.99, L:E.99, L:E.132, L:H.135 FE.91: 5 residues within 4Å: Chain M: E.23, E.56, H.59, E.132 Ligands: FE.92 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:E.23, M:E.23, M:E.56, M:H.59, M:E.132 FE.92: 5 residues within 4Å: Chain M: E.56, E.99, E.132, H.135 Ligands: FE.91 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:E.56, M:E.99, M:E.99, M:E.132, M:H.135 FE.98: 5 residues within 4Å: Chain N: E.23, E.56, H.59, E.132 Ligands: FE.99 5 PLIP interactions: 5 interactions with chain N Metal complexes: N:E.23, N:E.23, N:E.56, N:H.59, N:E.132 FE.99: 5 residues within 4Å: Chain N: E.56, E.99, E.132, H.135 Ligands: FE.98 5 PLIP interactions: 5 interactions with chain N Metal complexes: N:E.56, N:E.99, N:E.99, N:E.132, N:H.135 FE.104: 5 residues within 4Å: Chain O: E.23, E.56, H.59, E.132 Ligands: FE.105 5 PLIP interactions: 5 interactions with chain O Metal complexes: O:E.23, O:E.23, O:E.56, O:H.59, O:E.132 FE.105: 5 residues within 4Å: Chain O: E.56, E.99, E.132, H.135 Ligands: FE.104 5 PLIP interactions: 5 interactions with chain O Metal complexes: O:E.56, O:E.99, O:E.99, O:E.132, O:H.135 FE.110: 5 residues within 4Å: Chain P: E.23, E.56, H.59, E.132 Ligands: FE.111 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:E.23, P:E.23, P:E.56, P:H.59, P:E.132 FE.111: 5 residues within 4Å: Chain P: E.56, E.99, E.132, H.135 Ligands: FE.110 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:E.56, P:E.99, P:E.99, P:E.132, P:H.135

SO4.3: 5 residues within 4Å: Chain A: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: P.161, S.162, S.163 Ligand excluded by PLIP SO4.6: 4 residues within 4Å: Chain A: T.75, T.76, Q.77 Ligands: SO4.9 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain A: K.78, G.80, K.81, V.82 Chain B: T.76, Q.77 Ligand excluded by PLIP SO4.9: 7 residues within 4Å: Chain A: T.76, Q.77 Chain B: K.78, K.81, V.82 Ligands: SO4.6, GOL.16 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain B: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: K.114 Chain G: K.114 Chain N: K.114 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain B: P.161, S.162, S.163 Ligand excluded by PLIP SO4.20: 5 residues within 4Å: Chain C: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain C: S.144, K.147, N.148 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain C: P.161, S.162, S.163 Ligand excluded by PLIP SO4.26: 6 residues within 4Å: Chain D: K.50, S.162, S.163, T.164, G.165 Ligands: FEC.29 Ligand excluded by PLIP SO4.27: 3 residues within 4Å: Chain D: S.144, K.147, N.148 Ligand excluded by PLIP SO4.31: 2 residues within 4Å: Chain D: K.114 Chain E: K.114 Ligand excluded by PLIP SO4.34: 5 residues within 4Å: Chain E: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.35: 3 residues within 4Å: Chain E: P.161, S.162, S.163 Ligand excluded by PLIP SO4.40: 5 residues within 4Å: Chain F: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.41: 2 residues within 4Å: Chain F: N.4, R.5 Ligand excluded by PLIP SO4.42: 3 residues within 4Å: Chain F: P.161, S.162, S.163 Ligand excluded by PLIP SO4.48: 2 residues within 4Å: Chain G: S.144, N.148 Ligand excluded by PLIP SO4.49: 3 residues within 4Å: Chain G: P.161, S.162, S.163 Ligand excluded by PLIP SO4.50: 5 residues within 4Å: Chain G: L.149, G.150, D.151, T.152 Chain M: D.151 Ligand excluded by PLIP SO4.56: 5 residues within 4Å: Chain H: K.50, S.163, T.164, G.165 Ligands: FEC.51 Ligand excluded by PLIP SO4.57: 2 residues within 4Å: Chain H: S.144, N.148 Ligand excluded by PLIP SO4.58: 3 residues within 4Å: Chain H: P.161, S.162, S.163 Ligand excluded by PLIP SO4.63: 5 residues within 4Å: Chain I: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.64: 1 residues within 4Å: Chain I: R.5 Ligand excluded by PLIP SO4.65: 3 residues within 4Å: Chain I: S.144, K.147, N.148 Ligand excluded by PLIP SO4.66: 3 residues within 4Å: Chain I: P.161, S.162, S.163 Ligand excluded by PLIP SO4.72: 6 residues within 4Å: Chain J: K.50, S.162, S.163, T.164, G.165 Ligands: FEC.67 Ligand excluded by PLIP SO4.73: 1 residues within 4Å: Chain J: K.114 Ligand excluded by PLIP SO4.74: 4 residues within 4Å: Chain J: T.160, P.161, S.162, S.163 Ligand excluded by PLIP SO4.77: 3 residues within 4Å: Chain F: K.114 Chain K: K.114 Chain P: K.114 Ligand excluded by PLIP SO4.80: 5 residues within 4Å: Chain K: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.81: 3 residues within 4Å: Chain K: S.144, K.147, N.148 Ligand excluded by PLIP SO4.82: 3 residues within 4Å: Chain K: P.161, S.162, S.163 Ligand excluded by PLIP SO4.86: 6 residues within 4Å: Chain L: K.50, S.162, S.163, T.164, G.165 Ligands: FEC.90 Ligand excluded by PLIP SO4.87: 2 residues within 4Å: Chain L: N.4, R.5 Ligand excluded by PLIP SO4.88: 3 residues within 4Å: Chain L: S.144, K.147, N.148 Ligand excluded by PLIP SO4.89: 3 residues within 4Å: Chain L: G.150, D.151, T.152 Ligand excluded by PLIP SO4.93: 5 residues within 4Å: Chain M: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.94: 3 residues within 4Å: Chain M: P.161, S.162, S.163 Ligand excluded by PLIP SO4.100: 5 residues within 4Å: Chain N: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.101: 3 residues within 4Å: Chain N: S.144, K.147, N.148 Ligand excluded by PLIP SO4.102: 3 residues within 4Å: Chain N: P.161, S.162, S.163 Ligand excluded by PLIP SO4.106: 3 residues within 4Å: Chain O: P.161, S.162, S.163 Ligand excluded by PLIP SO4.107: 2 residues within 4Å: Chain O: R.123, R.127 Ligand excluded by PLIP SO4.112: 6 residues within 4Å: Chain P: K.50, S.162, S.163, T.164, G.165 Ligands: FEC.115 Ligand excluded by PLIP SO4.113: 2 residues within 4Å: Chain P: S.144, N.148 Ligand excluded by PLIP SO4.114: 3 residues within 4Å: Chain P: P.161, S.162, S.163 Ligand excluded by PLIP

GOL.8: 6 residues within 4Å: Chain A: R.58, H.59, N.62, L.124, R.127, E.131 Ligand excluded by PLIP GOL.16: 5 residues within 4Å: Chain A: Q.77, K.78 Chain B: Q.77, K.78 Ligands: SO4.9 Ligand excluded by PLIP GOL.17: 7 residues within 4Å: Chain B: R.58, H.59, N.62, L.124, R.127, I.128, E.131 Ligand excluded by PLIP GOL.23: 7 residues within 4Å: Chain C: R.58, H.59, N.62, L.124, R.127, I.128, E.131 Ligand excluded by PLIP GOL.30: 4 residues within 4Å: Chain C: Q.77, K.78 Chain D: Q.77, K.78 Ligand excluded by PLIP GOL.36: 7 residues within 4Å: Chain E: R.58, H.59, N.62, L.124, R.127, I.128, E.131 Ligand excluded by PLIP GOL.37: 4 residues within 4Å: Chain E: Q.77, K.78 Chain F: Q.77, K.78 Ligand excluded by PLIP GOL.44: 5 residues within 4Å: Chain F: R.58, H.59, N.62, R.127, E.131 Ligand excluded by PLIP GOL.45: 3 residues within 4Å: Chain F: P.89, V.90, K.147 Ligand excluded by PLIP GOL.52: 5 residues within 4Å: Chain G: R.58, H.59, N.62, R.127, E.131 Ligand excluded by PLIP GOL.53: 4 residues within 4Å: Chain G: Q.77, K.78 Chain H: Q.77, K.78 Ligand excluded by PLIP GOL.59: 7 residues within 4Å: Chain H: R.58, H.59, N.62, L.124, R.127, I.128, E.131 Ligand excluded by PLIP GOL.60: 6 residues within 4Å: Chain H: R.5, K.9, G.117 Chain I: D.100, I.103, E.104 Ligand excluded by PLIP GOL.68: 5 residues within 4Å: Chain H: R.123, R.127 Chain I: R.123, R.127 Ligands: GOL.69 Ligand excluded by PLIP GOL.69: 8 residues within 4Å: Chain I: R.58, H.59, N.62, L.124, R.127, I.128, E.131 Ligands: GOL.68 Ligand excluded by PLIP GOL.75: 4 residues within 4Å: Chain I: Q.77, K.78 Chain J: Q.77, K.78 Ligand excluded by PLIP GOL.76: 6 residues within 4Å: Chain J: H.59, N.62, L.124, R.127, I.128, E.131 Ligand excluded by PLIP GOL.83: 4 residues within 4Å: Chain K: Q.77, K.78 Chain L: Q.77, K.78 Ligand excluded by PLIP GOL.96: 5 residues within 4Å: Chain M: R.58, N.62, L.124, R.127, E.131 Ligand excluded by PLIP GOL.97: 4 residues within 4Å: Chain M: Q.77, K.78 Chain N: Q.77, K.78 Ligand excluded by PLIP GOL.103: 5 residues within 4Å: Chain N: H.59, N.62, L.124, R.127, E.131 Ligand excluded by PLIP GOL.108: 5 residues within 4Å: Chain O: R.58, H.59, N.62, R.127, E.131 Ligand excluded by PLIP GOL.109: 4 residues within 4Å: Chain O: Q.77, K.78 Chain P: Q.77, K.78 Ligand excluded by PLIP GOL.116: 6 residues within 4Å: Chain P: R.58, H.59, N.62, L.124, R.127, E.131 Ligand excluded by PLIP

FEC.15: 23 residues within 4Å: Chain A: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, I.54, M.57, E.61, S.168, K.169 Chain B: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169 22 PLIP interactions: 11 interactions with chain A, 11 interactions with chain B, Hydrophobic interactions: A:L.24, A:I.27, A:M.31, A:I.54, A:E.61, B:I.27, B:M.31, B:M.57, B:E.61 Hydrogen bonds: A:Y.35, A:Y.35, B:Y.35, B:S.168, B:S.168, B:K.169 Salt bridges: A:R.20, A:H.28, A:K.169, A:K.169, B:R.20, B:K.50 Water bridges: B:R.20 FEC.29: 24 residues within 4Å: Chain C: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, I.54, M.57, E.61, S.168, K.169 Chain D: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169 Ligands: SO4.26 21 PLIP interactions: 9 interactions with chain C, 12 interactions with chain D, Hydrophobic interactions: C:L.24, C:I.27, C:M.31, C:E.61, D:I.27, D:M.31, D:M.57, D:E.61 Hydrogen bonds: C:Y.35, D:S.168, D:S.168, D:S.168, D:K.169 Water bridges: C:R.20, D:R.20 Salt bridges: C:R.20, C:K.169, C:K.169, D:R.20, D:K.50, D:K.169 FEC.43: 22 residues within 4Å: Chain E: R.20, I.27, H.28, M.31, Y.35, K.50, I.54, M.57, E.61, S.168, K.169 Chain F: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169 21 PLIP interactions: 12 interactions with chain F, 9 interactions with chain E, Hydrophobic interactions: F:I.27, F:M.31, F:M.57, F:E.61, E:I.27, E:I.27, E:M.31, E:I.54, E:E.61 Hydrogen bonds: F:S.168, F:S.168, F:K.169, E:Y.35 Water bridges: F:R.20, F:N.32, F:T.164 Salt bridges: F:R.20, F:K.50, E:R.20, E:K.169, E:K.169 FEC.51: 24 residues within 4Å: Chain G: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, M.57, A.60, E.61, S.168, K.169 Chain H: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, R.58, E.61, S.168, K.169 Ligands: SO4.56 21 PLIP interactions: 10 interactions with chain G, 11 interactions with chain H, Hydrophobic interactions: G:L.24, G:I.27, G:M.57, G:E.61, H:I.27, H:M.31, H:E.61 Hydrogen bonds: G:Y.35, G:Y.35, H:Y.35, H:S.168, H:S.168, H:K.169 Salt bridges: G:R.20, G:H.28, G:K.169, G:K.169, H:R.20, H:K.50 Water bridges: H:R.20, H:N.32 FEC.67: 25 residues within 4Å: Chain I: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, I.54, M.57, A.60, E.61, S.168, K.169 Chain J: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169 Ligands: SO4.72 22 PLIP interactions: 11 interactions with chain I, 11 interactions with chain J, Hydrophobic interactions: I:L.24, I:I.27, I:M.31, I:I.54, I:E.61, J:I.27, J:M.31, J:E.61 Hydrogen bonds: I:Y.35, I:Y.35, J:S.168, J:S.168, J:K.169 Salt bridges: I:R.20, I:H.28, I:K.169, I:K.169, J:R.20, J:K.50 Water bridges: J:R.20, J:H.28, J:N.32 FEC.90: 24 residues within 4Å: Chain K: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, I.54, M.57, E.61, S.168, K.169 Chain L: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169 Ligands: SO4.86 21 PLIP interactions: 12 interactions with chain L, 9 interactions with chain K, Hydrophobic interactions: L:I.27, L:M.31, L:E.61, K:L.24, K:I.27, K:M.31, K:I.54, K:E.61 Hydrogen bonds: L:Y.35, L:S.168, L:S.168, L:K.169, K:Y.35 Water bridges: L:R.20, L:N.32 Salt bridges: L:R.20, L:K.50, L:K.169, K:R.20, K:K.169, K:K.169 FEC.95: 23 residues within 4Å: Chain M: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, I.54, M.57, E.61, S.168, K.169 Chain N: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169 21 PLIP interactions: 11 interactions with chain M, 10 interactions with chain N, Hydrophobic interactions: M:L.24, M:I.27, M:I.27, M:M.31, M:I.54, M:E.61, N:I.27, N:M.31, N:E.61 Hydrogen bonds: M:Y.35, N:Y.35, N:S.168, N:S.168, N:K.169 Water bridges: M:N.32, N:N.32 Salt bridges: M:R.20, M:K.169, M:K.169, N:R.20, N:K.50 FEC.115: 24 residues within 4Å: Chain O: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, I.54, M.57, E.61, S.168, K.169 Chain P: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169 Ligands: SO4.112 18 PLIP interactions: 10 interactions with chain P, 8 interactions with chain O, Hydrophobic interactions: P:I.27, P:M.31, P:M.57, P:E.61, O:L.24, O:M.31, O:I.54, O:E.61 Hydrogen bonds: P:S.168, P:S.168, P:K.169, O:Y.35 Water bridges: