- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 6 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
AGS.2: 18 residues within 4Å:- Chain A: I.45, N.61, R.113, R.133, Y.140, F.145, G.179, T.180, G.181, S.182, G.183, K.184, T.185, T.186, E.248, H.273, K.320
- Ligands: MG.1
18 PLIP interactions:18 interactions with chain A- Hydrogen bonds: A:I.45, A:N.61, A:G.181, A:S.182, A:G.183, A:K.184, A:K.184, A:T.185, A:T.185, A:T.186, A:T.186, A:E.248
- Water bridges: A:N.61, A:T.138
- Salt bridges: A:R.133, A:R.133, A:K.184
- pi-Stacking: A:Y.140
AGS.4: 19 residues within 4Å:- Chain B: I.45, N.61, R.113, R.133, S.136, Y.140, F.145, G.179, T.180, G.181, S.182, G.183, K.184, T.185, T.186, E.248, H.273, K.320
- Ligands: SO4.3
19 PLIP interactions:19 interactions with chain B- Hydrogen bonds: B:I.45, B:N.61, B:R.113, B:R.133, B:G.181, B:S.182, B:G.183, B:K.184, B:K.184, B:T.185, B:T.185, B:T.185, B:T.186, B:T.186, B:H.273
- Salt bridges: B:R.133, B:R.133, B:K.184
- pi-Stacking: B:Y.140
AGS.7: 18 residues within 4Å:- Chain C: I.45, N.61, R.113, R.133, Y.140, F.145, G.179, T.180, G.181, S.182, G.183, K.184, T.185, T.186, E.248, H.273, K.320
- Ligands: MG.6
18 PLIP interactions:18 interactions with chain C- Hydrogen bonds: C:I.45, C:N.61, C:G.181, C:S.182, C:G.183, C:K.184, C:K.184, C:T.185, C:T.185, C:T.186, C:T.186, C:E.248
- Water bridges: C:N.61, C:T.138
- Salt bridges: C:R.133, C:R.133, C:K.184
- pi-Stacking: C:Y.140
AGS.9: 19 residues within 4Å:- Chain D: I.45, N.61, R.113, R.133, S.136, Y.140, F.145, G.179, T.180, G.181, S.182, G.183, K.184, T.185, T.186, E.248, H.273, K.320
- Ligands: SO4.8
19 PLIP interactions:19 interactions with chain D- Hydrogen bonds: D:I.45, D:N.61, D:R.113, D:R.133, D:G.181, D:S.182, D:G.183, D:K.184, D:K.184, D:T.185, D:T.185, D:T.185, D:T.186, D:T.186, D:H.273
- Salt bridges: D:R.133, D:R.133, D:K.184
- pi-Stacking: D:Y.140
AGS.12: 18 residues within 4Å:- Chain E: I.45, N.61, R.113, R.133, Y.140, F.145, G.179, T.180, G.181, S.182, G.183, K.184, T.185, T.186, E.248, H.273, K.320
- Ligands: MG.11
18 PLIP interactions:18 interactions with chain E- Hydrogen bonds: E:I.45, E:N.61, E:G.181, E:S.182, E:G.183, E:K.184, E:K.184, E:T.185, E:T.185, E:T.186, E:T.186, E:E.248
- Water bridges: E:N.61, E:T.138
- Salt bridges: E:R.133, E:R.133, E:K.184
- pi-Stacking: E:Y.140
AGS.14: 19 residues within 4Å:- Chain F: I.45, N.61, R.113, R.133, S.136, Y.140, F.145, G.179, T.180, G.181, S.182, G.183, K.184, T.185, T.186, E.248, H.273, K.320
- Ligands: SO4.13
19 PLIP interactions:19 interactions with chain F- Hydrogen bonds: F:I.45, F:N.61, F:R.113, F:R.133, F:G.181, F:S.182, F:G.183, F:K.184, F:K.184, F:T.185, F:T.185, F:T.185, F:T.186, F:T.186, F:H.273
- Salt bridges: F:R.133, F:R.133, F:K.184
- pi-Stacking: F:Y.140
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 8 residues within 4Å:- Chain B: R.133, G.179, G.181, S.182, G.183, K.184, T.185
- Ligands: AGS.4
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:R.133, B:G.181, B:S.182, B:G.183, B:K.184, B:T.185, B:T.185
- Salt bridges: B:K.184
SO4.8: 8 residues within 4Å:- Chain D: R.133, G.179, G.181, S.182, G.183, K.184, T.185
- Ligands: AGS.9
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:R.133, D:G.181, D:S.182, D:G.183, D:K.184, D:T.185, D:T.185
- Salt bridges: D:K.184
SO4.13: 8 residues within 4Å:- Chain F: R.133, G.179, G.181, S.182, G.183, K.184, T.185
- Ligands: AGS.14
8 PLIP interactions:8 interactions with chain F- Hydrogen bonds: F:R.133, F:G.181, F:S.182, F:G.183, F:K.184, F:T.185, F:T.185
- Salt bridges: F:K.184
- 3 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)
2PE.5: 7 residues within 4Å:- Chain B: D.38, K.41, M.42, P.67, F.68, D.69, R.73
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.69, B:D.69, B:R.73
2PE.10: 7 residues within 4Å:- Chain D: D.38, K.41, M.42, P.67, F.68, D.69, R.73
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:D.69, D:D.69, D:R.73
2PE.15: 7 residues within 4Å:- Chain F: D.38, K.41, M.42, P.67, F.68, D.69, R.73
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:D.69, F:D.69, F:R.73
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Savvides, S.N. et al., VirB11 ATPases are dynamic hexameric assemblies: New insights into bacterial type IV secretion. Embo J. (2003)
- Release Date
- 2003-05-06
- Peptides
- virB11 homolog: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 6 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 3 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Savvides, S.N. et al., VirB11 ATPases are dynamic hexameric assemblies: New insights into bacterial type IV secretion. Embo J. (2003)
- Release Date
- 2003-05-06
- Peptides
- virB11 homolog: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B