SMTL ID : 1opx.2 (1 other biounit)

Crystal structure of the traffic ATPase (HP0525) of the Helicobacter pylori type IV secretion system bound by sulfate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-12-mer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.181, A:S.182, A:G.183, A:K.184, A:T.185, A:T.185 Water bridges: A:K.184, A:E.248 Salt bridges: A:R.133, A:K.184 SO4.2: 8 residues within 4Å: Chain B: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.181, B:S.182, B:G.183, B:K.184, B:T.185, B:T.185 Water bridges: B:K.184, B:K.184 Salt bridges: B:R.133, B:K.184 SO4.4: 8 residues within 4Å: Chain C: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:G.181, C:S.182, C:G.183, C:K.184, C:T.185, C:T.185 Water bridges: C:K.184, C:E.248 Salt bridges: C:R.133, C:K.184 SO4.5: 8 residues within 4Å: Chain D: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:G.181, D:S.182, D:G.183, D:K.184, D:T.185, D:T.185 Water bridges: D:K.184, D:K.184 Salt bridges: D:R.133, D:K.184 SO4.7: 8 residues within 4Å: Chain E: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:G.181, E:S.182, E:G.183, E:K.184, E:T.185, E:T.185 Water bridges: E:K.184, E:E.248 Salt bridges: E:R.133, E:K.184 SO4.8: 8 residues within 4Å: Chain F: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:G.181, F:S.182, F:G.183, F:K.184, F:T.185, F:T.185 Water bridges: F:K.184, F:K.184 Salt bridges: F:R.133, F:K.184 SO4.10: 8 residues within 4Å: Chain G: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 9 PLIP interactions: 9 interactions with chain G Hydrogen bonds: G:G.181, G:S.182, G:G.183, G:K.184, G:T.185 Water bridges: G:K.184, G:E.248 Salt bridges: G:R.133, G:K.184 SO4.11: 8 residues within 4Å: Chain H: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 9 PLIP interactions: 9 interactions with chain H Hydrogen bonds: H:G.181, H:S.182, H:G.183, H:K.184, H:T.185 Water bridges: H:K.184, H:K.184 Salt bridges: H:R.133, H:K.184 SO4.13: 8 residues within 4Å: Chain I: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 9 PLIP interactions: 9 interactions with chain I Hydrogen bonds: I:G.181, I:S.182, I:G.183, I:K.184, I:T.185 Water bridges: I:K.184, I:E.248 Salt bridges: I:R.133, I:K.184 SO4.14: 8 residues within 4Å: Chain J: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 9 PLIP interactions: 9 interactions with chain J Hydrogen bonds: J:G.181, J:S.182, J:G.183, J:K.184, J:T.185 Water bridges: J:K.184, J:K.184 Salt bridges: J:R.133, J:K.184 SO4.16: 8 residues within 4Å: Chain K: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 9 PLIP interactions: 9 interactions with chain K Hydrogen bonds: K:G.181, K:S.182, K:G.183, K:K.184, K:T.185 Water bridges: K:K.184, K:E.248 Salt bridges: K:R.133, K:K.184 SO4.17: 8 residues within 4Å: Chain L: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 9 PLIP interactions: 9 interactions with chain L Hydrogen bonds: L:G.181, L:S.182, L:G.183, L:K.184, L:T.185 Water bridges: L:K.184, L:K.184 Salt bridges: L:R.133, L:K.184

6 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.3: 7 residues within 4Å: Chain B: D.38, K.41, M.42, P.67, F.68, D.69, R.73 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.69, B:D.69, B:R.73 2PE.6: 7 residues within 4Å: Chain D: D.38, K.41, M.42, P.67, F.68, D.69, R.73 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:D.69, D:D.69, D:R.73 2PE.9: 7 residues within 4Å: Chain F: D.38, K.41, M.42, P.67, F.68, D.69, R.73 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:D.69, F:D.69, F:R.73 2PE.12: 7 residues within 4Å: Chain H: D.38, K.41, M.42, P.67, F.68, D.69, R.73 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:D.69, H:D.69, H:R.73 2PE.15: 7 residues within 4Å: Chain J: D.38, K.41, M.42, P.67, F.68, D.69, R.73 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:D.69, J:D.69, J:R.73 2PE.18: 7 residues within 4Å: Chain L: D.38, K.41, M.42, P.67, F.68, D.69, R.73 3 PLIP interactions: 3 interactions with chain L Hydrogen bonds: L:D.69, L:D.69, L:R.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Savvides, S.N. et al., VirB11 ATPases are dynamic hexameric assemblies: New insights into bacterial type IV secretion. Embo J. (2003)

Release Date

2003-05-06

Peptides

virB11 homolog: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

I
A

J
B

K
A

L
B

virB11 homolog

Related Entries With Identical Sequence