- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.2: 23 residues within 4Å:- Chain A: R.90, H.91, R.92, I.93, N.181, L.185, R.186, H.190
- Chain C: S.42, T.67, E.70, I.93, N.175, R.177
- Chain D: A.94, S.95, N.97, E.98, S.100, R.102, Y.103
- Ligands: FAD.8, UMP.11
26 PLIP interactions:14 interactions with chain A, 5 interactions with chain D, 7 interactions with chain C- Hydrophobic interactions: A:L.185
- Hydrogen bonds: A:R.90, A:R.90, A:R.92, A:R.92, A:I.93, A:N.181, A:N.181, A:R.186, D:A.94, D:E.98, D:E.98, C:T.67, C:N.175
- Water bridges: A:R.90, D:A.94, D:Y.96, C:S.42, C:E.66, C:T.67, C:R.177
- Salt bridges: A:H.91, A:H.91, A:R.92, A:R.92, C:R.177
FAD.5: 23 residues within 4Å:- Chain B: R.90, H.91, R.92, I.93, N.181, L.185, R.186, H.190
- Chain C: A.94, S.95, N.97, E.98, S.100, Y.103
- Chain D: S.42, T.67, E.70, I.93, N.175, R.177
- Ligands: UMP.9, FAD.10, PGE.13
27 PLIP interactions:16 interactions with chain B, 5 interactions with chain C, 6 interactions with chain D- Hydrophobic interactions: B:L.185
- Hydrogen bonds: B:R.90, B:R.90, B:R.92, B:I.93, B:N.181, B:N.181, B:R.186, C:S.95, C:E.98, C:E.98, D:T.67, D:N.175
- Water bridges: B:R.90, B:H.91, B:H.91, B:R.92, C:A.94, C:Y.96, D:T.67, D:R.177, D:R.177
- Salt bridges: B:H.91, B:H.91, B:R.92, B:R.92, D:R.177
FAD.8: 23 residues within 4Å:- Chain A: S.42, T.67, E.70, I.93, N.175, R.177
- Chain B: S.95, N.97, E.98, S.100, R.102, Y.103
- Chain C: R.90, H.91, R.92, I.93, N.181, L.185, R.186, H.190
- Ligands: FAD.2, PGE.3, UMP.4
24 PLIP interactions:16 interactions with chain C, 3 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: C:L.185
- Hydrogen bonds: C:R.90, C:R.90, C:R.92, C:R.92, C:I.93, C:N.181, C:N.181, C:R.186, A:N.175, B:A.94, B:E.98, B:E.98
- Water bridges: C:R.90, C:H.91, C:H.91, A:S.42, B:A.94, B:Y.96
- Salt bridges: C:H.91, C:H.91, C:R.92, C:R.92, A:R.177
FAD.10: 24 residues within 4Å:- Chain A: S.95, N.97, E.98, S.100, R.102, Y.103
- Chain B: S.42, T.67, E.70, I.93, N.175, R.177
- Chain D: R.90, H.91, R.92, I.93, N.181, L.185, R.186, H.190, A.191
- Ligands: UMP.1, FAD.5, PGE.7
23 PLIP interactions:13 interactions with chain D, 6 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: D:L.185
- Hydrogen bonds: D:R.90, D:R.90, D:R.92, D:R.92, D:I.93, D:N.181, D:N.181, A:S.95, A:E.98, A:E.98, A:S.100, B:N.175
- Water bridges: D:R.90, A:A.94, A:Y.96, B:S.42, B:E.66
- Salt bridges: D:H.91, D:H.91, D:R.92, D:R.92, B:R.177
- 5 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.3: 11 residues within 4Å:- Chain A: A.39, S.42, G.64, H.65, E.66, T.67, P.68, R.177
- Chain B: N.97
- Chain C: L.185
- Ligands: FAD.8
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:A.39, A:S.42, A:E.66, A:T.67
- Water bridges: A:S.42
PGE.6: 9 residues within 4Å:- Chain B: R.86, F.89, E.98
- Chain C: A.85, R.86, F.89, E.98
- Ligands: UMP.4, UMP.9
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:R.86, C:E.98, B:R.86, B:E.98
PGE.7: 9 residues within 4Å:- Chain A: N.97
- Chain B: S.42, G.64, H.65, E.66, T.67, P.68, R.177
- Ligands: FAD.10
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:N.97, B:S.42, B:T.67
PGE.12: 10 residues within 4Å:- Chain A: A.85, R.86, F.89, E.98
- Chain D: A.85, R.86, F.89, E.98
- Ligands: UMP.1, UMP.11
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain A- Hydrogen bonds: D:R.86, D:E.98, A:R.86, A:E.98
PGE.13: 9 residues within 4Å:- Chain C: N.97
- Chain D: A.39, S.42, F.43, G.64, H.65, T.67, P.68
- Ligands: FAD.5
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:S.42, D:G.64
- Water bridges: D:E.66, D:E.66
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mathews, I.I. et al., Functional Analysis of Substrate and Cofactor Complex Structures of a Thymidylate Synthase-Complementing Protein. Structure (2003)
- Release Date
- 2003-06-24
- Peptides
- Thymidylate synthase thyX: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 5 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mathews, I.I. et al., Functional Analysis of Substrate and Cofactor Complex Structures of a Thymidylate Synthase-Complementing Protein. Structure (2003)
- Release Date
- 2003-06-24
- Peptides
- Thymidylate synthase thyX: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D