SMTL ID : 1ok8.1

Crystal structure of the dengue 2 virus envelope glycoprotein in the postfusion conformation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.67, F.90, M.118 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.67 NAG.3: 3 residues within 4Å: Chain B: N.67, F.90, M.118 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.67 NAG.5: 3 residues within 4Å: Chain C: N.67, F.90, M.118 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.67

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: K.110 Chain B: K.110 Chain C: K.110 Ligands: CL.4, CL.6 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: K.110 Chain B: K.110 Chain C: K.110 Ligands: CL.2, CL.6 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: K.110 Chain B: K.110 Chain C: K.110 Ligands: CL.2, CL.4 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Modis, Y. et al., Structure of the Dengue Virus Envelope Protein After Membrane Fusion. Nature (2004)

Release Date

2004-01-29

Peptides

MAJOR ENVELOPE PROTEIN E: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

MAJOR ENVELOPE PROTEIN E

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