SMTL ID : 1oqo.1

Complex between G0 version of an Fc bound to a minimized version of Protein A called Mini-Z

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUL.1: 13 residues within 4Å: Chain A: F.6, F.8, K.11, T.25, V.29, D.30, Q.60, N.62, T.64, R.66, K.99 Ligands: NAG-NAG-BMA-MAN-NDG-MAN-NAG-FUC.2, NAG-NAG-BMA-MAN-NDG-MAN-NAG-FUC.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.66 Water bridges: A:T.25

1 x NAG- NAG- BMA- MAN- NDG- MAN- NAG- FUC: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NDG-MAN-NAG-FUC.2: 11 residues within 4Å: Chain C: F.6, F.8, K.11, V.29, D.30, Q.60, N.62, T.64, R.66 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUL.1, NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUL.1 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.66, C:K.11, C:K.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raju, T.S. et al., Impact of Fc Glycans on The Effector Functions Vary with the Antibody mechanism of Action. To be Published

Release Date

2003-03-20

Peptides

immunoglobulin gamma-1 heavy chain constant region: AC
Minimized version of Protein A (Z34C): BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
C

D
D

immunoglobulin gamma-1 heavy chain constant region

Minimized version of Protein A (Z34C)

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