- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 7 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.10: 4 residues within 4Å:- Chain A: L.40, N.47, S.48, S.49
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.40
- Hydrogen bonds: A:N.47
NAG.11: 4 residues within 4Å:- Chain A: E.35, N.36, N.37, N.54
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.37, A:N.54
NAG.12: 2 residues within 4Å:- Chain A: N.241
- Chain C: Y.247
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain C- Water bridges: A:N.241, C:Y.247, C:Y.247, C:V.250
NAG.13: 5 residues within 4Å:- Chain A: A.281, N.283, S.311, T.312, D.640
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.283, A:D.640
- Water bridges: A:N.283
NAG.15: 5 residues within 4Å:- Chain B: L.40, Y.45, N.47, S.48, S.49
No protein-ligand interaction detected (PLIP)NAG.16: 6 residues within 4Å:- Chain B: I.156, Q.189, N.191, T.193, E.194, K.229
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:I.156
- Hydrogen bonds: B:N.191, B:E.194, B:E.194
NAG.17: 5 residues within 4Å:- Chain B: P.240, N.241
- Chain D: Y.247, V.250, R.298
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:P.240
- Hydrogen bonds: B:N.241
NAG.18: 4 residues within 4Å:- Chain B: N.283, S.311, T.312, R.558
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:T.312
- Hydrogen bonds: B:N.283
- Water bridges: B:R.558
NAG.20: 5 residues within 4Å:- Chain C: L.40, Y.45, N.47, S.48, S.49
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:L.40
- Hydrogen bonds: C:N.47
NAG.21: 4 residues within 4Å:- Chain C: E.35, N.36, N.37, N.54
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.35, C:N.37
NAG.22: 6 residues within 4Å:- Chain C: I.156, Q.189, N.191, T.193, E.194, K.229
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:I.156
- Hydrogen bonds: C:N.191, C:T.193, C:E.194, C:E.194
- Water bridges: C:Q.189, C:T.227, C:T.227, C:K.229
NAG.23: 3 residues within 4Å:- Chain A: V.250, L.256
- Chain C: N.241
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:Y.247, C:N.241
- Water bridges: A:Q.248, A:V.250
NAG.24: 5 residues within 4Å:- Chain C: A.281, N.283, S.311, T.312, R.558
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.558, C:D.640
NAG.26: 4 residues within 4Å:- Chain D: Y.45, N.47, S.48, S.49
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:Y.45
- Hydrogen bonds: D:S.49
NAG.27: 2 residues within 4Å:- Chain B: V.250
- Chain D: N.241
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain B- Water bridges: D:N.241, B:Y.247
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.14: 6 residues within 4Å:- Chain A: A.322, E.323, H.325, I.336, G.368, I.369
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.323, A:I.369
- Water bridges: A:I.369
- Salt bridges: A:H.325
SO4.19: 6 residues within 4Å:- Chain B: A.322, E.323, H.325, I.336, G.368, I.369
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.323, B:I.369
- Water bridges: B:I.367
- Salt bridges: B:H.325
SO4.25: 6 residues within 4Å:- Chain C: A.322, E.323, H.325, I.336, G.368, I.369
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:E.323, C:I.369
- Water bridges: C:E.323
- Salt bridges: C:H.325
SO4.28: 6 residues within 4Å:- Chain D: A.322, E.323, H.325, I.336, G.368, I.369
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:E.323, D:I.369
- Water bridges: D:E.323
- Salt bridges: D:H.325
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Engel, M. et al., The Crystal Structure of Dipeptidyl Peptidase IV (CD26) Reveals its Functional Regulation and Enzymatic Mechanism. Proc.Natl.Acad.Sci.USA (2003)
- Release Date
- 2003-05-06
- Peptides
- dipeptidyl peptidase IV: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 7 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Engel, M. et al., The Crystal Structure of Dipeptidyl Peptidase IV (CD26) Reveals its Functional Regulation and Enzymatic Mechanism. Proc.Natl.Acad.Sci.USA (2003)
- Release Date
- 2003-05-06
- Peptides
- dipeptidyl peptidase IV: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D