1p7v.1 | SWISS-MODEL Template Library

Modelling
Repository
Tools
Documentation
Log in
Create Account

SMTL ID : 1p7v.1

Structure of a complex formed between Proteinase K and a designed heptapeptide inhibitor Pro-Ala-Pro-Phe-Ala-Ala-Ala at atomic resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.08 Å

Oligo State

monomer

Ligands

1 x PRO- ALA- PRO- PHE- ALA- ALA- ALA: inhibitor peptide(Non-covalent)

PRO-ALA-PRO-PHE-ALA-ALA-ALA.1:

23 residues within 4Å:

Chain A: N.67, H.69, L.96, N.99, G.100, S.101, G.102, Q.103, Y.104, I.107, S.132, L.133, G.134, G.135, G.136, A.158, G.160, N.161, W.212, I.220, T.223, S.224
Ligands: NO3.4

13 PLIP interactions:

13 interactions with chain A

Hydrophobic interactions: A:L.96, A:L.133, A:A.158, A:I.220
Hydrogen bonds: A:G.102, A:G.102, A:Y.104, A:G.134
Water bridges: A:Y.104, A:Y.104, A:G.136, A:N.161, A:R.218

2 x CA: CALCIUM ION(Non-covalent)

CA.2:	5 residues within 4Å: Chain A: P.175, V.177, C.178, T.179, D.200 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:P.175, A:V.177, A:D.200, A:D.200, H₂O.1
CA.3:	2 residues within 4Å: Chain A: S.17, P.18 No protein-ligand interaction detected (PLIP)

3 x NO3: NITRATE ION(Non-functional Binders)

NO3.4:	9 residues within 4Å: Chain A: H.69, N.161, S.221, G.222, T.223, S.224, M.225 Ligands: PRO-ALA-PRO-PHE-ALA-ALA-ALA.1, PRO-ALA-PRO-PHE-ALA-ALA-ALA.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.161, A:S.224, A:S.224
NO3.5:	5 residues within 4Å: Chain A: Y.60, Y.61, K.94, D.97, D.98 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.61, A:K.94, A:D.98, A:D.98 Water bridges: A:D.98, A:D.98, A:N.99
NO3.6:	5 residues within 4Å: Chain A: M.55, V.56, K.57, T.58, S.63 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.58, A:T.58

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Bilgrami, S. et al., Structure of a complex formed between Proteinase K and a designed heptapeptide inhibitor Pro-Ala-Pro-Phe-Ala-Ala-Ala at atomic resolution. To be published

Release Date

2004-05-18

Peptides

proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

proteinase K

Related Entries With Identical Sequence

1ic6.1 | 1p7w.1 | 2dqk.1 | 2duj.1 | 2g4v.1 | 2hd4.1 | 2hpz.1 | 2id8.1 | 2pq2.1 | 2pwa.1 | 2pwb.1 | 2pyz.1 | 2v8b.1 | 3aj8.1 | 3aj9.1 | 3dyb.1 | 3gt3.1 | 3gt4.1 | 3l1k.1 | 3osz.1 | 3q40.1 | 3q5g.1 | 3qmp.1 | 4b5l.1 | 4fon.1 | 4wob.1 | 4woc.1 | 4zar.1 | 5avj.1 | 5avk.1 more...less...

5b1d.1 | 5b1e.1 | 5cw1.1 | 5i9s.1 | 5kxu.1 | 5kxv.1 | 5mjl.1 | 5roc.1 | 5rod.1 | 5roe.1 | 5rof.1 | 5rog.1 | 5roh.1 | 5roi.1 | 5roj.1 | 5rok.1 | 5rol.1 | 5rom.1 | 5ron.1 | 5roo.1 | 5rop.1 | 5roq.1 | 5ror.1 | 5ros.1 | 5rot.1 | 5rou.1 | 5rov.1 | 5row.1 | 5rox.1 | 5roy.1 | 5roz.1 | 5rp0.1 | 5rp1.1 | 5rp2.1 | 5rp3.1 | 5rp4.1 | 5rp5.1 | 5rp6.1 | 5rp7.1 | 5rp8.1 | 5rp9.1 | 5rpa.1 | 5rpb.1 | 5rpc.1 | 5rpd.1 | 5rpe.1 | 5rpf.1 | 5rpg.1 | 5rph.1 | 5rpi.1 | 5rpj.1 | 5rpk.1 | 5rpl.1 | 5rpm.1 | 5rpn.1 | 5rpo.1 | 5rpp.1 | 5rpq.1 | 5rpr.1 | 5rps.1 | 5rpt.1 | 5rpu.1 | 5rpv.1 | 5rpw.1 | 5rpx.1 | 5rpy.1 | 5rpz.1 | 5uvl.1 | 5whw.1 | 5wjg.1 | 5wjh.1 | 5wrc.1 | 6fjs.1 | 6j43.1 | 6k2p.1 | 6k2r.1 | 6k2s.1 | 6k2t.1 | 6k2v.1 | 6k2w.1 | 6k2x.1 | 6law.1 | 6mh6.1 | 6n4u.1 | 6qf1.1 | 6qxv.1 | 6rug.1 | 6ruh.1 | 6ruk.1 | 6run.1 | 6ruw.1 | 6rve.1 | 6rvg.1 | 6rzp.1 | 6txg.1 | 6v8r.1 | 6zet.1 | 6zeu.1 | 6zev.1 | 7a68.1 | 7a9f.1 | 7a9k.1 | 7a9m.1 | 7c0p.1 | 7ln7.1 | 7lpt.1 | 7lpu.1 | 7lpv.1 | 7lq8.1 | 7lq9.1 | 7lqa.1 | 7lqb.1 | 7lqc.1 | 7ltd.1 | 7lti.1 | 7ltv.1 | 7lu0.1 | 7lu1.1 | 7lu2.1 | 7lu3.1 | 7njj.1 | 7nuy.1 | 7nuz.1 | 7s4z.1 | 8e53.1 | 8f05.1 | 8f06.1 | 8f07.1 | 8fyo.1 | 8fyp.1 | 8fyq.1 | 8fyr.1 | 8fys.1 | 8sog.1 | 8sou.1 | 8sov.1 | 8spl.1 | 8sqv.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

Swiss Institute of BioinformaticsSIB
Schwede Group
Contact Us
Terms of use
Back to the Top