SMTL ID : 1pjh.1

Structural studies on delta3-delta2-enoyl-CoA isomerase: the variable mode of assembly of the trimeric disks of the crotonase superfamily

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

20 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: S.62, G.63, S.204, N.205, A.206, E.207 Ligand excluded by PLIP SO4.2: 6 residues within 4Å: Chain A: R.64, K.143, P.202, S.203, S.204 Ligands: SO4.3 Ligand excluded by PLIP SO4.3: 6 residues within 4Å: Chain A: N.141, K.143, N.200, M.201, P.202 Ligands: SO4.2 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: Y.225, P.227 Chain B: K.257, Y.258, D.261 Ligand excluded by PLIP SO4.7: 8 residues within 4Å: Chain B: N.141, D.142, K.143, N.200, M.201, P.202, S.203 Ligands: SO4.8 Ligand excluded by PLIP SO4.8: 6 residues within 4Å: Chain B: R.64, K.143, P.202, S.203, S.204 Ligands: SO4.7 Ligand excluded by PLIP SO4.9: 5 residues within 4Å: Chain B: Y.225, P.227 Chain C: K.257, Y.258, D.261 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain C: S.62, G.63, N.205, A.206, E.207 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain C: R.64, K.143, P.202, S.203, S.204 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain C: R.64, K.143, S.203 Ligand excluded by PLIP SO4.15: 6 residues within 4Å: Chain D: S.62, G.63, S.204, N.205, A.206, E.207 Ligand excluded by PLIP SO4.16: 6 residues within 4Å: Chain D: R.64, K.143, P.202, S.203, S.204 Ligands: SO4.17 Ligand excluded by PLIP SO4.17: 6 residues within 4Å: Chain D: N.141, K.143, N.200, M.201, P.202 Ligands: SO4.16 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain D: Y.225, P.227 Chain E: K.257, Y.258, D.261 Ligand excluded by PLIP SO4.21: 8 residues within 4Å: Chain E: N.141, D.142, K.143, N.200, M.201, P.202, S.203 Ligands: SO4.22 Ligand excluded by PLIP SO4.22: 6 residues within 4Å: Chain E: R.64, K.143, P.202, S.203, S.204 Ligands: SO4.21 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain E: Y.225, P.227 Chain F: K.257, Y.258, D.261 Ligand excluded by PLIP SO4.25: 5 residues within 4Å: Chain F: S.62, G.63, N.205, A.206, E.207 Ligand excluded by PLIP SO4.26: 5 residues within 4Å: Chain F: R.64, K.143, P.202, S.203, S.204 Ligand excluded by PLIP SO4.27: 3 residues within 4Å: Chain F: R.64, K.143, S.203 Ligand excluded by PLIP

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain A: G.69, A.70, G.125, L.126, L.153, L.155, E.158, W.259, F.268 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.70, A:L.126, A:E.158 GOL.6: 5 residues within 4Å: Chain A: I.195, S.196 Chain B: E.176, K.182, I.188 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:I.195, B:K.182 GOL.10: 9 residues within 4Å: Chain B: G.69, A.70, F.72, G.125, L.126, L.153, L.155, E.158, W.259 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:A.70, B:L.126, B:E.158 Water bridges: B:S.68, B:S.68, B:A.70 GOL.14: 10 residues within 4Å: Chain C: G.69, A.70, F.97, R.100, G.125, L.126, L.153, L.155, E.158, W.259 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:A.70, C:R.100, C:L.126, C:E.158 Water bridges: C:S.68 GOL.19: 9 residues within 4Å: Chain D: G.69, A.70, G.125, L.126, L.153, L.155, E.158, W.259, F.268 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:A.70, D:L.126, D:E.158 GOL.20: 5 residues within 4Å: Chain D: I.195, S.196 Chain E: E.176, K.182, I.188 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:I.195, E:K.182 GOL.24: 9 residues within 4Å: Chain E: G.69, A.70, F.72, G.125, L.126, L.153, L.155, E.158, W.259 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:A.70, E:L.126, E:E.158 Water bridges: E:S.68, E:S.68, E:A.70 GOL.28: 10 residues within 4Å: Chain F: G.69, A.70, F.97, R.100, G.125, L.126, L.153, L.155, E.158, W.259 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:A.70, F:R.100, F:L.126, F:E.158 Water bridges: F:S.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mursula, A.M. et al., Structural studies on delta(3)-delta(2)-enoyl-CoA isomerase: the variable mode of assembly of the trimeric disks of the crotonase superfamily. Febs Lett. (2004)

Release Date

2004-01-20

Peptides

enoyl-CoA isomerase; Eci1p: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

enoyl-CoA isomerase; Eci1p

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