SMTL ID : 1pl6.2 (2 other biounits)

Human SDH/NADH/inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.44, S.46, H.69, E.70, E.155 Ligands: 572.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.44, A:H.69, H2O.1 ZN.4: 6 residues within 4Å: Chain B: C.44, S.46, H.69, E.70, E.155 Ligands: 572.6 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.44, B:H.69, H2O.12

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 19 residues within 4Å: Chain A: V.159, G.181, P.182, I.183, T.202, D.203, L.204, R.208, I.223, C.249, T.250, A.252, V.272, G.273, L.274, V.296, F.297, R.298 Ligands: 572.3 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.159, A:I.183 Hydrogen bonds: A:A.180, A:G.181, A:I.183, A:L.204, A:R.208, A:R.208, A:T.250, A:L.274, A:V.296, A:R.298 Water bridges: A:G.45, A:G.181, A:G.184, A:T.202, A:A.254, A:V.296 Salt bridges: A:R.208 NAD.5: 19 residues within 4Å: Chain B: V.159, G.181, P.182, I.183, T.202, D.203, L.204, R.208, I.223, C.249, T.250, A.252, V.272, G.273, L.274, V.296, F.297, R.298 Ligands: 572.6 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:V.159, B:I.183 Hydrogen bonds: B:G.181, B:I.183, B:L.204, B:R.208, B:R.208, B:T.250, B:L.274, B:V.296, B:R.298 Water bridges: B:G.45, B:G.45, B:G.181, B:G.184, B:V.296 Salt bridges: B:R.208

2 x 572: 4-[2-(HYDROXYMETHYL)PYRIMIDIN-4-YL]-N,N-DIMETHYLPIPERAZINE-1-SULFONAMIDE(Non-covalent)

572.3: 14 residues within 4Å: Chain A: C.44, S.46, Y.50, I.56, F.59, H.69, F.118, T.121, E.155, L.274, F.297, R.298 Ligands: ZN.1, NAD.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.46, A:E.155 Water bridges: A:Y.50 pi-Cation interactions: A:F.59 572.6: 14 residues within 4Å: Chain B: C.44, S.46, Y.50, I.56, F.59, H.69, F.118, T.121, E.155, L.274, F.297, R.298 Ligands: ZN.4, NAD.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.46, B:E.155 pi-Cation interactions: B:F.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pauly, T.A. et al., X-ray crystallographic and kinetic studies of human sorbitol dehydrogenase. Structure (2003)

Release Date

2004-02-17

Peptides

Sorbitol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Sorbitol dehydrogenase

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