SMTL ID : 1pwg.1

Covalent Penicilloyl Acyl Enzyme Complex Of The Streptomyces R61 DD-Peptidase With A Highly Specific Penicillin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.07 Å

Oligo State

monomer

Ligands

1 x HE0: (2R,4S)-2-[(1R)-1-{[(6S)-6-carboxy-6-(glycylamino)hexanoyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid(Covalent)

HE0.1: 16 residues within 4Å: Chain A: G.61, S.62, F.120, T.123, Y.159, N.161, L.214, W.233, R.285, H.298, T.299, G.300, T.301, Q.303, S.326, N.327 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.120, A:W.233, A:T.301 Hydrogen bonds: A:S.62, A:T.116, A:T.123, A:Y.159, A:N.161, A:T.299, A:T.301, A:T.301, A:S.326, A:N.327 Water bridges: A:K.65, A:T.123, A:T.301, A:T.301 Salt bridges: A:R.285, A:H.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silvaggi, N.R. et al., Crystal structures of complexes between the R61 DD-peptidase and peptidoglycan-mimetic beta-lactams: a non-covalent complex with a "perfect penicillin. J.Mol.Biol. (2005)

Release Date

2004-07-13

Peptides

D-alanyl-D-alanine carboxypeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D-alanyl-D-alanine carboxypeptidase

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