SMTL ID : 1qay.2 (1 other biounit)

TERNARY COMPLEX OF PSEUDOMONAS MEVALONII HMG-COA REDUCTASE WITH MEVALONATE AND NAD+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-hexamer

Ligands

3 x MEV: (R)-MEVALONATE(Non-covalent)

MEV.1: 12 residues within 4Å: Chain A: E.83, R.261, T.264, H.265, K.267, G.268, N.271, A.368, L.372, I.377 Chain B: I.213 Ligands: NAD.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.368, A:I.377 Hydrogen bonds: A:E.83, A:R.261, A:G.268, A:N.271 Salt bridges: A:R.261 MEV.3: 12 residues within 4Å: Chain C: E.83, R.261, T.264, H.265, K.267, G.268, N.271, A.368, L.372, I.377 Chain D: I.213 Ligands: NAD.4 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:A.368, C:I.377 Hydrogen bonds: C:E.83, C:R.261, C:G.268, C:N.271 Salt bridges: C:R.261 MEV.5: 12 residues within 4Å: Chain E: E.83, R.261, T.264, H.265, K.267, G.268, N.271, A.368, L.372, I.377 Chain F: I.213 Ligands: NAD.6 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:A.368, E:I.377 Hydrogen bonds: E:E.83, E:R.261, E:G.268, E:N.271 Salt bridges: E:R.261

3 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 23 residues within 4Å: Chain A: E.83, T.264, K.267, H.381 Chain B: L.149, L.152, R.182, D.183, A.184, M.185, G.186, A.187, N.188, T.189, N.191, L.214, N.216, D.283, A.286, V.328, G.329, G.330 Ligands: MEV.1 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:A.187, B:L.214 Hydrogen bonds: B:R.182, B:D.183, B:D.183, B:A.184, B:M.185, B:G.186, B:A.187, B:N.188, B:N.188, B:T.189, B:N.216, B:N.216, B:D.283 Water bridges: B:A.331 NAD.4: 23 residues within 4Å: Chain C: E.83, T.264, K.267, H.381 Chain D: L.149, L.152, R.182, D.183, A.184, M.185, G.186, A.187, N.188, T.189, N.191, L.214, N.216, D.283, A.286, V.328, G.329, G.330 Ligands: MEV.3 17 PLIP interactions: 17 interactions with chain D Hydrophobic interactions: D:A.187, D:L.214 Hydrogen bonds: D:R.182, D:D.183, D:D.183, D:D.183, D:A.184, D:M.185, D:G.186, D:A.187, D:N.188, D:N.188, D:T.189, D:N.216, D:N.216, D:D.283 Water bridges: D:A.331 NAD.6: 23 residues within 4Å: Chain E: E.83, T.264, K.267, H.381 Chain F: L.149, L.152, R.182, D.183, A.184, M.185, G.186, A.187, N.188, T.189, N.191, L.214, N.216, D.283, A.286, V.328, G.329, G.330 Ligands: MEV.5 18 PLIP interactions: 16 interactions with chain F, 2 interactions with chain E Hydrophobic interactions: F:A.187, F:L.214 Hydrogen bonds: F:R.182, F:D.183, F:D.183, F:A.184, F:M.185, F:G.186, F:A.187, F:N.188, F:N.188, F:T.189, F:N.216, F:N.216, F:D.283 Water bridges: F:A.331, E:E.82, E:E.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tabernero, L. et al., Substrate-induced closure of the flap domain in the ternary complex structures provides insights into the mechanism of catalysis by 3-hydroxy-3-methylglutaryl-CoA reductase. Proc.Natl.Acad.Sci.USA (1999)

Release Date

1999-06-18

Peptides

PROTEIN (3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE): ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

PROTEIN (3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE)

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