SMTL ID : 4i6y.1

3-hydroxy-3-methyl (HMG) Coenzyme A Reductase bound to R-Mevalonate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x MEV: (R)-MEVALONATE(Non-covalent)

MEV.1: 11 residues within 4Å: Chain A: E.83, R.261, T.264, H.265, K.267, G.268, N.271, A.368, L.372 Chain B: I.213 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.83, A:N.271 Water bridges: A:G.268 Salt bridges: A:R.261 MEV.7: 11 residues within 4Å: Chain A: I.213 Chain B: E.83, R.261, T.264, H.265, K.267, G.268, N.271, A.368, L.372 Ligands: GOL.8 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.368 Hydrogen bonds: B:E.83, B:N.271 Water bridges: B:G.268, A:D.283 Salt bridges: B:R.261

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: S.85, I.86, A.89, N.271, Q.364, G.367, A.368 Ligands: MEV.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.85, A:N.271, A:G.367 GOL.3: 6 residues within 4Å: Chain A: Y.294, A.295, R.297, G.302, S.303, L.304 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.297, A:R.297 Water bridges: A:S.303 GOL.8: 8 residues within 4Å: Chain B: S.85, I.86, A.89, N.271, Q.364, G.367, A.368 Ligands: MEV.7 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.85, B:N.271, B:G.367 GOL.9: 6 residues within 4Å: Chain B: N.100, G.102, F.103, T.104, Q.226, R.228 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.100, B:T.104, B:Q.226, B:R.228 Water bridges: B:T.104, B:T.104, B:R.228

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 7 residues within 4Å: Chain A: A.184, M.185, G.186, A.187, N.188, T.189, G.329 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:M.185, A:G.186, A:G.186, A:A.187, A:N.188, A:T.189, A:T.189 Water bridges: A:G.330, A:G.330 SO4.5: 6 residues within 4Å: Chain A: R.6, L.7, P.8, R.11, N.67, K.95 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.67 Water bridges: A:R.11, A:R.11, A:S.66, A:S.91 Salt bridges: A:R.11, A:K.95 SO4.6: 1 residues within 4Å: Chain A: R.133 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.133 SO4.10: 5 residues within 4Å: Chain B: A.184, M.185, G.186, A.187, N.188 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:M.185, B:G.186, B:A.187, B:N.188, B:N.188 Water bridges: B:T.189 SO4.11: 3 residues within 4Å: Chain B: P.8, A.9, K.95 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.9 Water bridges: B:R.11 Salt bridges: B:K.95 SO4.12: 2 residues within 4Å: Chain B: R.6, R.98 4 PLIP interactions: 4 interactions with chain B Water bridges: B:Q.69, B:R.98 Salt bridges: B:R.6, B:R.98

1 x NO2: NITRITE ION(Non-covalent)

NO2.13: 3 residues within 4Å: Chain B: S.106, S.107, R.224 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.106, B:S.107, B:R.224 Water bridges: B:S.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Steussy, C.N. et al., A Novel Role for Coenzyme A during Hydride Transfer in 3-Hydroxy-3-methylglutaryl-coenzyme A Reductase. Biochemistry (2013)

Release Date

2013-07-17

Peptides

3-hydroxy-3-methylglutaryl-coenzyme A reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-hydroxy-3-methylglutaryl-coenzyme A reductase

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