SMTL ID : 1r15.4 (3 other biounits)

Aplysia ADP ribosyl cyclase with bound nicotinamide and R5P

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x N: ANY 5'-MONOPHOSPHATE NUCLEOTIDE(Covalent)

N.1: 12 residues within 4Å: Chain A: F.76, W.77, S.78, G.79, L.97, E.98, S.144, S.173, F.174, F.175, E.179 Ligands: NCA.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:W.77, A:W.77, A:W.77, A:G.79, A:L.97, A:S.144, A:R.170, A:S.173, A:F.174, A:F.175 N.4: 12 residues within 4Å: Chain B: F.76, W.77, S.78, G.79, L.97, E.98, S.144, S.173, F.174, F.175, E.179 Ligands: NCA.5 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:W.77, B:W.77, B:W.77, B:G.79, B:L.97, B:S.144, B:R.170, B:S.173, B:F.174, B:F.175

4 x NCA: NICOTINAMIDE(Non-covalent)

NCA.2: 6 residues within 4Å: Chain A: W.77, E.98, N.107, S.108, W.140 Ligands: N.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.107, A:S.108 pi-Stacking: A:W.140, A:W.140 NCA.3: 8 residues within 4Å: Chain A: L.109, W.111, A.135, R.136, E.137, S.138, F.139, W.140 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.139 Hydrogen bonds: A:W.111, A:W.111, A:F.139 NCA.5: 6 residues within 4Å: Chain B: W.77, E.98, N.107, S.108, W.140 Ligands: N.4 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.107, B:S.108 pi-Stacking: B:W.140, B:W.140 NCA.6: 7 residues within 4Å: Chain B: L.109, V.110, W.111, A.135, R.136, F.139, W.140 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.111, B:F.139, B:W.140 Hydrogen bonds: B:W.111, B:W.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Love, M.L. et al., ADP-ribosyl cyclase; crystal structures reveal a covalent intermediate. Structure (2004)

Release Date

2004-03-09

Peptides

ADP-ribosyl cyclase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

ADP-ribosyl cyclase

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