SMTL ID : 3i9o.1

Crystal structure of ADP ribosyl cyclase complexed with ribo-2'F-ADP ribose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x AVW: [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3R,4S)-4-fluoro-3-hydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate(Non-covalent)(Covalent)

AVW.1: 13 residues within 4Å: Chain A: F.76, W.77, S.78, G.79, Y.81, L.97, S.144, Y.147, R.170, S.173, F.174, F.175, E.179 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:W.77, A:W.77, A:G.79, A:S.144, A:R.170, A:F.174, A:F.175 pi-Stacking: A:W.77 AVW.2: 12 residues within 4Å: Chain B: F.76, W.77, S.78, G.79, L.97, E.98, W.140, S.144, S.173, F.174, F.175, E.179 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:W.77, B:G.79, B:S.144, B:S.144, B:F.174, B:F.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Graeff, R. et al., Mechanism of cyclizing NAD to cyclic ADP-ribose by ADP-ribosyl cyclase and CD38. J.Biol.Chem. (2009)

Release Date

2009-07-28

Peptides

ADP-ribosyl cyclase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ADP-ribosyl cyclase

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