SMTL ID : 1r16.1

Aplysia ADP ribosyl cyclase with bound pyridylcarbinol and R5P

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x N: ANY 5'-MONOPHOSPHATE NUCLEOTIDE(Covalent)

N.1: 10 residues within 4Å: Chain A: F.76, W.77, S.78, G.79, L.97, S.144, S.173, F.174, F.175, E.179 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:W.77, A:W.77, A:G.79, A:S.144, A:S.173, A:F.174, A:F.175 Water bridges: A:M.75, A:L.97 N.3: 12 residues within 4Å: Chain B: F.76, W.77, S.78, G.79, L.97, S.144, Y.147, R.170, S.173, F.174, F.175, E.179 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:W.77, B:W.77, B:G.79, B:S.144, B:R.170, B:S.173, B:F.174, B:F.175 Water bridges: B:M.75, B:L.97

2 x PYF: 3-PYRIDINYLCARBINOL(Non-covalent)

PYF.2: 4 residues within 4Å: Chain A: E.98, N.107, S.108, W.140 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.98, A:N.107, A:S.108 Water bridges: A:L.109 pi-Stacking: A:W.140, A:W.140 PYF.4: 4 residues within 4Å: Chain B: E.98, N.107, S.108, W.140 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.98, B:N.107, B:S.108 Water bridges: B:L.109 pi-Stacking: B:W.140, B:W.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Love, M.L. et al., ADP-ribosyl cyclase; crystal structures reveal a covalent intermediate. Structure (2004)

Release Date

2004-03-09

Peptides

ADP-ribosyl cyclase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ADP-ribosyl cyclase

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