SMTL ID : 1r61.1 (1 other biounit)

The structure of predicted metal-dependent hydrolase from Bacillus stearothermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: D.53, H.157, E.169 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.53, A:H.157, A:E.169 ZN.7: 4 residues within 4Å: Chain B: D.53, H.57, H.157, E.169 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.157, B:E.169, B:E.169

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: M.3, R.205 Chain B: M.3, R.205 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.205, B:R.205 SO4.3: 4 residues within 4Å: Chain A: Y.19, K.20, K.22 Ligands: SO4.6 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.22, A:K.22 Salt bridges: A:K.20, A:K.22 SO4.4: 2 residues within 4Å: Chain A: K.22, E.24 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.22 SO4.5: 4 residues within 4Å: Chain A: E.114, D.115, A.116, H.118 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.115, A:A.116 Salt bridges: A:H.118 SO4.6: 4 residues within 4Å: Chain A: K.20, R.149, A.150 Ligands: SO4.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.150 Water bridges: A:Q.151 Salt bridges: A:K.20 SO4.8: 4 residues within 4Å: Chain B: Y.19, K.20, R.149, A.150 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.19, B:A.150 Water bridges: B:Q.151 Salt bridges: B:K.20 SO4.9: 3 residues within 4Å: Chain B: H.84, V.85, N.86 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.86, B:N.86 SO4.10: 4 residues within 4Å: Chain B: E.114, D.115, A.116, H.118 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.115, B:A.116 Salt bridges: B:H.118 SO4.11: 3 residues within 4Å: Chain B: P.11, D.115, R.172 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.115, B:K.174 Salt bridges: B:R.172 SO4.12: 3 residues within 4Å: Chain B: H.118, F.119, E.120 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.119, B:E.120 Salt bridges: B:H.118 SO4.13: 1 residues within 4Å: Chain B: R.180 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.180 SO4.14: 7 residues within 4Å: Chain B: N.111, E.114, D.115, A.116, F.117, L.145, R.172 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:E.114 Water bridges: B:H.118, B:H.118, B:L.145, B:R.172, B:R.172, B:R.172, B:R.172 Salt bridges: B:R.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maderova, J. et al., The structure of potential metal-dependent hydrolase with cyclase activity. To be Published

Release Date

2004-03-30

Peptides

metal-dependent hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

metal-dependent hydrolase

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