SMTL ID : 3krv.1

The Structure Of Potential Metal-Dependent Hydrolase With Cyclase Activity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: R.199 Chain B: F.65 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: R.180 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: P.69, L.70 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain B: P.11 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain B: P.69, L.70, N.71 Ligand excluded by PLIP CL.14: 1 residues within 4Å: Chain B: G.179 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain B: V.85, N.86 Ligand excluded by PLIP CL.16: 5 residues within 4Å: Chain B: T.9, I.12, T.50, P.197, A.198 Ligand excluded by PLIP

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 6 residues within 4Å: Chain A: K.110, N.111, E.114, E.120, F.121, I.122 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.111, A:E.114, A:I.122 Water bridges: A:D.87, A:E.114, A:E.120 SO4.5: 1 residues within 4Å: Chain A: N.86 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.86, A:N.86 SO4.6: 2 residues within 4Å: Chain A: K.22, E.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.24 Salt bridges: A:K.22 SO4.7: 4 residues within 4Å: Chain A: E.114, D.115, A.116, H.118 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.115, A:A.116 Salt bridges: A:H.118 SO4.8: 3 residues within 4Å: Chain A: K.20, R.149, A.150 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.150 Water bridges: A:R.149, A:Q.151 Salt bridges: A:K.20 SO4.17: 4 residues within 4Å: Chain B: Y.19, K.20, R.149, A.150 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.19, B:A.150 Salt bridges: B:K.20 SO4.18: 4 residues within 4Å: Chain B: E.114, D.115, A.116, H.118 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.115, B:A.116 Salt bridges: B:H.118 SO4.19: 1 residues within 4Å: Chain B: R.180 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.180

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 6 residues within 4Å: Chain A: K.78, L.79, F.80, D.98, E.178, G.179 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.79, A:D.98 GOL.20: 3 residues within 4Å: Chain B: H.118, F.119, E.120 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.119, B:E.120

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.10: 5 residues within 4Å: Chain A: A.10, P.17, D.115, A.116, L.145 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.118, A:R.172, A:R.172

1 x ZN: ZINC ION(Non-covalent)

ZN.11: 4 residues within 4Å: Chain B: H.47, H.51, D.53, E.169 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.47, B:H.51, B:D.53, B:E.169, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rezacova, P. et al., The Structure Of Potential Metal-Dependent Hydrolase With Cyclase Activity. To be Published

Release Date

2010-01-05

Peptides

Hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hydrolase

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