SMTL ID : 1r61.2 (1 other biounit)

The structure of predicted metal-dependent hydrolase from Bacillus stearothermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: D.53, H.157, E.169 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.53, A:H.157, A:E.169 ZN.7: 4 residues within 4Å: Chain B: D.53, H.57, H.157, E.169 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.157, B:E.169, B:E.169 ZN.15: 3 residues within 4Å: Chain C: D.53, H.157, E.169 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.53, C:H.157, C:E.169 ZN.21: 4 residues within 4Å: Chain D: D.53, H.57, H.157, E.169 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.157, D:E.169, D:E.169

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: M.3, R.205 Chain B: M.3, R.205 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: Y.19, K.20, K.22 Ligands: SO4.6 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain A: K.22, E.24 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: E.114, D.115, A.116, H.118 Ligand excluded by PLIP SO4.6: 4 residues within 4Å: Chain A: K.20, R.149, A.150 Ligands: SO4.3 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain B: Y.19, K.20, R.149, A.150 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: H.84, V.85, N.86 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain B: E.114, D.115, A.116, H.118 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain B: P.11, D.115, R.172 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain B: H.118, F.119, E.120 Ligand excluded by PLIP SO4.13: 1 residues within 4Å: Chain B: R.180 Ligand excluded by PLIP SO4.14: 7 residues within 4Å: Chain B: N.111, E.114, D.115, A.116, F.117, L.145, R.172 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain C: M.3, R.205 Chain D: M.3, R.205 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain C: Y.19, K.20, K.22 Ligands: SO4.20 Ligand excluded by PLIP SO4.18: 2 residues within 4Å: Chain C: K.22, E.24 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain C: E.114, D.115, A.116, H.118 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain C: K.20, R.149, A.150 Ligands: SO4.17 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain D: Y.19, K.20, R.149, A.150 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain D: H.84, V.85, N.86 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain D: E.114, D.115, A.116, H.118 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain D: P.11, D.115, R.172 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain D: H.118, F.119, E.120 Ligand excluded by PLIP SO4.27: 1 residues within 4Å: Chain D: R.180 Ligand excluded by PLIP SO4.28: 7 residues within 4Å: Chain D: N.111, E.114, D.115, A.116, F.117, L.145, R.172 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maderova, J. et al., The structure of potential metal-dependent hydrolase with cyclase activity. To be Published

Release Date

2004-03-30

Peptides

metal-dependent hydrolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

metal-dependent hydrolase

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