- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.50 Å
- Oligo State
- hetero-6-6-6-mer
- Ligands
- 6 x DC- DA- DA- DA: DNA (5'-D(P*CP*AP*AP*A)-3')(Non-covalent)
- 36 x DC: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE(Non-functional Binders)(Non-covalent)(Covalent)
DC.2: 1 residues within 4Å:- Ligands: DC-DA-DA-DA.1
16 PLIP interactions:4 interactions with chain A, 4 interactions with chain D, 2 interactions with chain F, 2 interactions with chain C, 1 interactions with chain M, 3 interactions with chain G- Hydrophobic interactions: A:F.277, D:F.277, G:F.277
- Hydrogen bonds: A:R.10, A:K.167, D:K.167, F:Q.36, C:Q.36, M:R.10, G:R.10
- Salt bridges: A:R.10, D:R.10, D:R.412, F:K.21, C:K.21, G:R.10
DC.3: 3 residues within 4Å:- Chain G: R.10, F.277
- Ligands: DC.18
Protein-ligand interaction information (PLIP) not availableDC.4: 3 residues within 4Å:- Chain A: R.10, F.277
- Ligands: DC.17
Protein-ligand interaction information (PLIP) not availableDC.5: 4 residues within 4Å:- Chain A: K.167
- Chain C: Q.35, Q.36
- Ligands: DC-DA-DA-DA.1
Protein-ligand interaction information (PLIP) not availableDC.6: 2 residues within 4Å:- Chain A: D.242
- Chain C: K.25
Protein-ligand interaction information (PLIP) not availableDC.7: 5 residues within 4Å:- Chain C: R.18, K.21
- Chain D: V.47, R.412, N.414
Protein-ligand interaction information (PLIP) not availableDC.9: 1 residues within 4Å:- Ligands: DC-DA-DA-DA.8
Protein-ligand interaction information (PLIP) not availableDC.10: 3 residues within 4Å:- Chain M: R.10, F.277
- Ligands: DC.32
Protein-ligand interaction information (PLIP) not availableDC.11: 3 residues within 4Å:- Chain D: R.10, F.277
- Ligands: DC.31
Protein-ligand interaction information (PLIP) not availableDC.12: 4 residues within 4Å:- Chain D: K.167
- Chain F: Q.35, Q.36
- Ligands: DC-DA-DA-DA.8
Protein-ligand interaction information (PLIP) not availableDC.13: 2 residues within 4Å:- Chain D: D.242
- Chain F: K.25
Protein-ligand interaction information (PLIP) not availableDC.14: 2 residues within 4Å:- Chain F: R.18, K.21
Protein-ligand interaction information (PLIP) not availableDC.16: 1 residues within 4Å:- Ligands: DC-DA-DA-DA.15
Protein-ligand interaction information (PLIP) not availableDC.17: 3 residues within 4Å:- Chain A: R.10, F.277
- Ligands: DC.4
Protein-ligand interaction information (PLIP) not availableDC.18: 3 residues within 4Å:- Chain G: R.10, F.277
- Ligands: DC.3
Protein-ligand interaction information (PLIP) not availableDC.19: 4 residues within 4Å:- Chain G: K.167
- Chain I: Q.35, Q.36
- Ligands: DC-DA-DA-DA.15
17 PLIP interactions:2 interactions with chain G, 2 interactions with chain I, 2 interactions with chain L, 2 interactions with chain P, 1 interactions with chain D, 3 interactions with chain M, 2 interactions with chain O, 3 interactions with chain J- Hydrogen bonds: G:K.167, I:Q.36, L:Q.36, P:R.10, D:R.10, M:K.167, O:Q.36, J:K.167
- Salt bridges: G:R.412, I:K.21, L:K.21, P:R.412, M:R.10, O:K.21, J:R.10
- Hydrophobic interactions: M:F.277, J:F.277
DC.20: 2 residues within 4Å:- Chain G: D.242
- Chain I: K.25
Protein-ligand interaction information (PLIP) not availableDC.21: 2 residues within 4Å:- Chain I: R.18, K.21
Protein-ligand interaction information (PLIP) not availableDC.23: 1 residues within 4Å:- Ligands: DC-DA-DA-DA.22
Protein-ligand interaction information (PLIP) not availableDC.24: 3 residues within 4Å:- Chain P: R.10, F.277
- Ligands: DC.39
Protein-ligand interaction information (PLIP) not availableDC.25: 3 residues within 4Å:- Chain J: R.10, F.277
- Ligands: DC.38
Protein-ligand interaction information (PLIP) not availableDC.26: 4 residues within 4Å:- Chain J: K.167
- Chain L: Q.35, Q.36
- Ligands: DC-DA-DA-DA.22
Protein-ligand interaction information (PLIP) not availableDC.27: 2 residues within 4Å:- Chain J: D.242
- Chain L: K.25
Protein-ligand interaction information (PLIP) not availableDC.28: 5 residues within 4Å:- Chain G: V.47, R.412, N.414
- Chain L: R.18, K.21
Protein-ligand interaction information (PLIP) not availableDC.30: 1 residues within 4Å:- Ligands: DC-DA-DA-DA.29
Protein-ligand interaction information (PLIP) not availableDC.31: 3 residues within 4Å:- Chain D: R.10, F.277
- Ligands: DC.11
Protein-ligand interaction information (PLIP) not availableDC.32: 3 residues within 4Å:- Chain M: R.10, F.277
- Ligands: DC.10
Protein-ligand interaction information (PLIP) not availableDC.33: 4 residues within 4Å:- Chain M: K.167
- Chain O: Q.35, Q.36
- Ligands: DC-DA-DA-DA.29
Protein-ligand interaction information (PLIP) not availableDC.34: 2 residues within 4Å:- Chain M: D.242
- Chain O: K.25
Protein-ligand interaction information (PLIP) not availableDC.35: 5 residues within 4Å:- Chain O: R.18, K.21
- Chain P: V.47, R.412, N.414
Protein-ligand interaction information (PLIP) not availableDC.37: 1 residues within 4Å:- Ligands: DC-DA-DA-DA.36
6 PLIP interactions:2 interactions with chain R, 1 interactions with chain J, 3 interactions with chain P- Hydrogen bonds: R:Q.36, J:R.10, P:K.167
- Salt bridges: R:K.21, P:R.10
- Hydrophobic interactions: P:F.277
DC.38: 3 residues within 4Å:- Chain J: R.10, F.277
- Ligands: DC.25
Protein-ligand interaction information (PLIP) not availableDC.39: 3 residues within 4Å:- Chain P: R.10, F.277
- Ligands: DC.24
Protein-ligand interaction information (PLIP) not availableDC.40: 4 residues within 4Å:- Chain P: K.167
- Chain R: Q.35, Q.36
- Ligands: DC-DA-DA-DA.36
Protein-ligand interaction information (PLIP) not availableDC.41: 2 residues within 4Å:- Chain P: D.242
- Chain R: K.25
Protein-ligand interaction information (PLIP) not availableDC.42: 2 residues within 4Å:- Chain R: R.18, K.21
Protein-ligand interaction information (PLIP) not available- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bernal, R.A. et al., The phiX174 Protein J Mediates DNA Packaging and Viral Attachment to Host Cells. J.Mol.Biol. (2004)
- Release Date
- 2004-04-13
- Peptides
- Capsid protein: ADGJMP
Major spike protein: BEHKNQ
Small core protein: CFILOR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FD
FG
FJ
FM
FP
FB
GE
GH
GK
GN
GQ
GC
JF
JI
JL
JO
JR
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.50 Å
- Oligo State
- hetero-6-6-6-mer
- Ligands
- 6 x DC- DA- DA- DA: DNA (5'-D(P*CP*AP*AP*A)-3')(Non-covalent)
- 36 x DC: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE(Non-functional Binders)(Non-covalent)(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bernal, R.A. et al., The phiX174 Protein J Mediates DNA Packaging and Viral Attachment to Host Cells. J.Mol.Biol. (2004)
- Release Date
- 2004-04-13
- Peptides
- Capsid protein: ADGJMP
Major spike protein: BEHKNQ
Small core protein: CFILOR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FD
FG
FJ
FM
FP
FB
GE
GH
GK
GN
GQ
GC
JF
JI
JL
JO
JR
J