SMTL ID : 1reo.1

L-amino acid oxidase from Agkistrodon halys pallas

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.172, Y.175 No protein-ligand interaction detected (PLIP) NAG.2: 5 residues within 4Å: Chain A: E.337, H.342, N.359, H.360, N.361 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.361, A:N.361 NAG.5: 2 residues within 4Å: Chain B: N.172, Y.175 No protein-ligand interaction detected (PLIP) NAG.6: 5 residues within 4Å: Chain B: E.337, H.342, N.359, H.360, N.361 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.361, B:N.361

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 9 residues within 4Å: Chain A: R.90, N.208, H.223, F.227, Y.372, I.430, G.464, W.465 Ligands: FAD.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.223 Water bridges: A:R.90, A:R.90 Salt bridges: A:R.90, A:R.90, A:H.223 CIT.7: 9 residues within 4Å: Chain B: R.90, N.208, H.223, F.227, Y.372, I.430, G.464, W.465 Ligands: FAD.8 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:H.223 Water bridges: B:R.90, B:R.90 Salt bridges: B:R.90, B:R.90, B:H.223

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.4: 36 residues within 4Å: Chain A: V.39, G.40, A.41, G.42, M.43, S.44, L.62, E.63, A.64, G.69, G.70, R.71, V.72, G.87, P.88, M.89, R.90, A.259, Q.260, V.261, C.293, T.294, T.295, A.298, Y.372, W.420, Y.425, G.429, I.430, G.456, E.457, G.464, W.465, I.466, T.469 Ligands: CIT.3 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:Y.372, A:W.420, A:I.430 Hydrogen bonds: A:M.43, A:S.44, A:A.64, A:R.71, A:M.89, A:R.90, A:R.90, A:V.261, A:V.261, A:E.457, A:E.457, A:I.466, A:T.469 Water bridges: A:G.42, A:G.45, A:E.63, A:S.65, A:S.65, A:R.71, A:V.72, A:V.72, A:T.295, A:T.295, A:D.467, A:T.469 Salt bridges: A:R.71, A:R.71 FAD.8: 36 residues within 4Å: Chain B: V.39, G.40, A.41, G.42, M.43, S.44, L.62, E.63, A.64, G.69, G.70, R.71, V.72, G.87, P.88, M.89, R.90, A.259, Q.260, V.261, C.293, T.294, T.295, A.298, Y.372, W.420, Y.425, G.429, I.430, G.456, E.457, G.464, W.465, I.466, T.469 Ligands: CIT.7 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:Y.372, B:W.420, B:I.430 Hydrogen bonds: B:M.43, B:S.44, B:A.64, B:R.71, B:M.89, B:R.90, B:R.90, B:V.261, B:V.261, B:E.457, B:E.457, B:I.466, B:T.469 Water bridges: B:G.42, B:G.45, B:E.63, B:S.65, B:S.65, B:R.71, B:V.72, B:V.72, B:T.295, B:T.295, B:D.467, B:T.469 Salt bridges: B:R.71, B:R.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Purification, partial characterization, crystallization and structural determination of AHP-LAAO, a novel L-amino-acid oxidase with cell apoptosis-inducing activity from Agkistrodon halys pallas venom. Acta Crystallogr.,Sect.D (2004)

Release Date

2004-05-04

Peptides

AHPLAAO: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

AHPLAAO

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