- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x B12: COBALAMIN(Non-covalent)
B12.1: 45 residues within 4Å:- Chain A: Y.88, A.115, F.116, L.118, A.138, V.205, R.206, T.208, Y.242, H.243, E.246, A.247, G.332, W.333, L.335, E.369, A.370, A.372, L.373, Q.453, I.599, L.601, D.607, G.608, H.609, D.610, R.611, G.612, V.615, I.616, Y.620, G.652, S.654, L.656, A.657, G.658, G.684, G.685, V.686, Y.704, T.705, P.706, T.708, S.713
- Ligands: GOL.3
36 PLIP interactions:36 interactions with chain A,- Hydrophobic interactions: A:R.206, A:Y.242, A:I.599, A:L.601, A:V.615, A:I.616, A:I.616, A:L.656, A:L.656, A:V.686, A:Y.704, A:Y.704
- Hydrogen bonds: A:A.138, A:R.206, A:G.332, A:E.369, A:Q.453, A:G.608, A:H.609, A:D.610, A:D.610, A:D.610, A:R.611, A:G.612, A:L.656, A:G.685, A:T.708, A:T.708
- Water bridges: A:Y.88, A:Y.88, A:W.333, A:L.373, A:G.707, A:G.707, A:G.707
- Metal complexes: A:H.609
- 1 x DCA: DESULFO-COENZYME A(Non-covalent)
DCA.2: 25 residues within 4Å:- Chain A: Y.74, T.76, M.77, F.80, R.81, T.84, R.86, Y.88, S.113, S.161, S.163, T.165, T.194, N.235, R.282, S.284, F.286, R.325, T.326, H.327, Q.360, S.361
- Chain B: V.41, R.44
- Ligands: GOL.3
39 PLIP interactions:37 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:Y.88, A:F.286, A:H.327
- Hydrogen bonds: A:Y.74, A:T.76, A:R.81, A:T.84, A:T.84, A:R.86, A:S.113, A:S.161, A:S.163, A:T.194, A:S.284, A:S.284, A:S.361, B:R.44, B:R.44
- Water bridges: A:T.76, A:S.163, A:T.165, A:T.165, A:T.165, A:N.235, A:N.235, A:N.235, A:N.235, A:R.282, A:R.282, A:R.282, A:R.282, A:R.282, A:R.282, A:R.325, A:R.325, A:H.327
- Salt bridges: A:R.86, A:R.282
- pi-Cation interactions: A:R.81
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: Y.88, R.206, Y.242, H.243, Q.329
- Ligands: B12.1, DCA.2
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.206, A:R.206, A:Q.329
- Water bridges: A:Y.88, A:Y.242, A:Y.242, A:H.243
GOL.4: 6 residues within 4Å:- Chain A: A.40, E.41, A.249, T.250, M.291, N.292
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:M.291, A:N.292
- Water bridges: A:N.292, A:N.292, A:E.296
GOL.5: 6 residues within 4Å:- Chain B: E.113, R.168, N.238, N.242, W.327, Q.364
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.168, B:N.238, B:N.242, B:W.327, B:Q.364
GOL.6: 6 residues within 4Å:- Chain B: T.97, R.99, A.105, W.106, G.353, A.354
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.99, B:A.105, B:G.353
- Water bridges: B:A.105
GOL.7: 7 residues within 4Å:- Chain B: R.328, N.445, R.448, A.449, H.490, R.491, D.492
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.445, B:R.448, B:R.491, B:D.492
- Water bridges: B:N.445, B:N.445
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mancia, F. et al., How coenzyme B12 radicals are generated: the crystal structure of methylmalonyl-coenzyme A mutase at 2 A resolution. Structure (1996)
- Release Date
- 1997-01-27
- Peptides
- METHYLMALONYL-COA MUTASE: A
METHYLMALONYL-COA MUTASE: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x B12: COBALAMIN(Non-covalent)
- 1 x DCA: DESULFO-COENZYME A(Non-covalent)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mancia, F. et al., How coenzyme B12 radicals are generated: the crystal structure of methylmalonyl-coenzyme A mutase at 2 A resolution. Structure (1996)
- Release Date
- 1997-01-27
- Peptides
- METHYLMALONYL-COA MUTASE: A
METHYLMALONYL-COA MUTASE: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B