SMTL ID : 1ro6.2 (1 other biounit)

Crystal structure of PDE4B2B complexed with Rolipram (R & S)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.88, H.124, D.125, D.242 Ligands: ROL.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.88, A:H.124, A:D.125, A:D.242, H2O.5

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: H.124, D.125, E.154, H.157, T.195 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.125, A:T.195, H2O.4, H2O.4

1 x ROL: ROLIPRAM(Non-covalent)

ROL.3: 19 residues within 4Å: Chain A: Y.83, H.84, H.88, D.125, M.197, D.242, L.243, N.245, Y.253, W.256, T.257, I.260, M.261, F.264, M.281, S.292, Q.293, F.296 Ligands: ZN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.83, A:I.260, A:F.264, A:F.296, A:F.296 Hydrogen bonds: A:D.242, A:Q.293 Water bridges: A:Y.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, R.X. et al., Crystal structures of the catalytic domain of phosphodiesterase 4B complexed with AMP, 8-Br-AMP, and rolipram. J.Mol.Biol. (2004)

Release Date

2004-12-07

Peptides

cAMP-specific 3',5'-cyclic phosphodiesterase 4B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

cAMP-specific 3',5'-cyclic phosphodiesterase 4B

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