SMTL ID : 1ror.2 (1 other biounit)

CRYSTAL STRUCTURES OF THE CATALYTIC DOMAIN OF PHOSPHODIESTERASE 4B2B COMPLEXED WITH AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.88, H.124, D.125, D.242 Ligands: AMP.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.88, A:H.124, A:D.125, A:D.242, AMP.3 ZN.2: 2 residues within 4Å: Chain A: D.125 Ligands: AMP.3 5 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.125, H2O.1, H2O.1, H2O.1, AMP.3

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.3: 15 residues within 4Å: Chain A: Y.83, H.84, H.88, H.124, D.125, M.197, D.242, L.243, N.245, I.260, F.264, Q.293, F.296 Ligands: ZN.1, ZN.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:D.125, A:N.245, A:N.245, A:Q.293 Water bridges: A:Y.83, A:Y.83, A:H.84, A:T.195 Salt bridges: A:H.84, A:H.88, A:H.124 pi-Stacking: A:F.296, A:F.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, R.X. et al., Crystal structures of the catalytic domain of phosphodiesterase 4B complexed with AMP, 8-Br-AMP, and rolipram. J.Mol.Biol. (2004)

Release Date

2004-12-07

Peptides

cAMP-specific 3',5'-cyclic phosphodiesterase 4B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

cAMP-specific 3',5'-cyclic phosphodiesterase 4B

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