SMTL ID : 1s0z.1

Crystal structure of the VDR LBD complexed to seocalcitol.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x EB1: SEOCALCITOL(Non-covalent)

EB1.1: 23 residues within 4Å: Chain A: Y.30, Y.34, L.63, A.67, L.69, V.70, S.73, I.107, R.110, S.111, S.114, W.122, C.124, Y.131, V.136, H.141, L.145, L.149, H.233, Y.237, L.250, V.254, F.258 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.63, A:A.67, A:L.69, A:L.69, A:V.70, A:V.70, A:I.107, A:W.122, A:Y.131, A:V.136, A:V.136, A:L.145, A:L.250, A:V.254, A:F.258 Hydrogen bonds: A:Y.30, A:S.73, A:R.110, A:S.114, A:H.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tocchini-Valentini, G. et al., Crystal structures of the vitamin D nuclear receptor liganded with the vitamin D side chain analogues calcipotriol and seocalcitol, receptor agonists of clinical importance. Insights into a structural basis for the switching of calcipotriol to a receptor antagonist by further side chain modification. J.Med.Chem. (2004)

Release Date

2004-04-13

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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