SMTL ID : 1s63.1

Human protein farnesyltransferase complexed with L-778,123 and FPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 12 residues within 4Å: Chain A: Y.241, G.282, Q.285, D.286 Chain B: A.230, R.231, Q.233, N.234, W.235, G.237, N.269, S.272 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:A.230, B:N.269, B:N.269, B:S.272, A:Q.285, A:D.286, A:Y.241, A:G.282, A:Q.285, B:Q.233 Water bridges: A:D.286, A:D.286, B:W.235

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 Ligands: 778.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.3: 16 residues within 4Å: Chain A: K.164, Y.166, Y.200 Chain B: W.102, R.202, Y.205, H.248, G.250, Y.251, C.254, R.291, K.294, Y.300, W.303, Y.361 Ligands: 778.4 22 PLIP interactions: 2 interactions with chain A, 20 interactions with chain B Hydrophobic interactions: A:Y.200, B:W.102, B:R.202, B:Y.205, B:Y.251, B:W.303 Salt bridges: A:K.164, B:H.248, B:R.291, B:R.291, B:K.294, B:K.294 Water bridges: B:R.291, B:R.291, B:R.291, B:R.291, B:K.294, B:K.294, B:K.294, B:L.295, B:L.295, B:Y.300

1 x 778: 4-[(5-{[4-(3-CHLOROPHENYL)-3-OXOPIPERAZIN-1-YL]METHYL}-1H-IMIDAZOL-1-YL)METHYL]BENZONITRILE(Non-covalent)

778.4: 12 residues within 4Å: Chain A: Y.166 Chain B: S.99, W.102, W.106, R.202, D.297, C.299, Y.300, Y.361, H.362 Ligands: ZN.2, FPP.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.202 pi-Stacking: B:W.102, B:W.106, B:Y.361

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reid, T.S. et al., Crystallographic Analysis Reveals that Anticancer Clinical Candidate L-778,123 Inhibits Protein Farnesyltransferase and Geranylgeranyltransferase-I by Different Binding Modes. Biochemistry (2004)

Release Date

2004-07-27

Peptides

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit: A
Protein farnesyltransferase beta subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit

Protein farnesyltransferase beta subunit

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