SMTL ID : 1s9d.1

ARF1[DELTA 1-17]-GDP-MG IN COMPLEX WITH BREFELDIN A AND A SEC7 DOMAIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.14, E.37 Ligands: GDP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.14, H2O.1, H2O.2, H2O.3, H2O.6

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 16 residues within 4Å: Chain A: L.8, D.9, A.10, A.11, G.12, K.13, T.14, T.15, N.109, K.110, D.112, L.113, C.142, A.143, T.144 Ligands: MG.1 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:L.8, A:A.10, A:A.11, A:G.12, A:K.13, A:T.14, A:T.14, A:T.15, A:T.15, A:N.109, A:K.110, A:K.110, A:A.143, A:T.144 Water bridges: A:G.7, A:K.13, A:T.14, A:T.14, A:T.15, A:T.144, A:T.144 Salt bridges: A:K.13, A:D.112 pi-Cation interactions: A:K.110

1 x AFB: 1,6,7,8,9,11A,12,13,14,14A-DECAHYDRO-1,13-DIHYDROXY-6-METHYL-4H-CYCLOPENT[F]OXACYCLOTRIDECIN-4-ONE(Non-covalent)

AFB.3: 15 residues within 4Å: Chain A: M.1, F.34, V.36, T.47, V.48, W.49, D.50, I.57, W.61, Y.64 Chain B: Y.141, M.145, T.148, D.149, V.155 13 PLIP interactions: 3 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:M.145, B:T.148, B:V.155, A:F.34, A:F.34, A:W.49, A:W.49, A:W.49, A:Y.64, A:Y.64 Hydrogen bonds: A:D.50, A:W.61 Water bridges: A:T.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Renault, L. et al., Structural Snapshots of the Mechanism and Inhibition of a Guanine Nucleotide Exchange Factor. Nature (2003)

Release Date

2004-02-10

Peptides

ADP-Ribosylation Factor 1: A
Arno: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

ADP-Ribosylation Factor 1

Arno

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