SMTL ID : 1sa4.1

human protein farnesyltransferase complexed with FPP and R115777

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 12 residues within 4Å: Chain A: Y.241, G.282, Q.285, D.286 Chain B: A.230, R.231, Q.233, N.234, W.235, G.237, N.269, S.272 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:A.230, B:N.269, B:N.269, B:S.272, A:Q.285, A:D.286, A:Y.241, A:G.282, A:Q.285, B:Q.233 Water bridges: A:D.286, A:D.286, B:W.235, B:G.244

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 Ligands: JAN.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.3: 15 residues within 4Å: Chain A: K.164, Y.166, H.201 Chain B: R.202, Y.205, H.248, G.250, Y.251, C.254, R.291, K.294, Y.300, W.303, Y.361 Ligands: JAN.4 21 PLIP interactions: 19 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:R.202, B:Y.205, B:Y.251, B:W.303 Water bridges: B:G.290, B:G.290, B:R.291, B:R.291, B:R.291, B:K.294, B:K.294, B:K.294, B:L.295, B:Y.300, A:K.164 Salt bridges: B:H.248, B:R.291, B:R.291, B:K.294, B:K.294, A:K.164

1 x JAN: 6-[(S)-AMINO(4-CHLOROPHENYL)(1-METHYL-1H-IMIDAZOL-5-YL)METHYL]-4-(3-CHLOROPHENYL)-1-METHYLQUINOLIN-2(1H)-ONE(Non-covalent)

JAN.4: 14 residues within 4Å: Chain A: Y.166 Chain B: L.96, S.99, W.102, W.106, R.202, D.297, C.299, Y.300, D.359, Y.361, H.362 Ligands: ZN.2, FPP.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.106, B:Y.361, B:Y.361 Water bridges: B:Y.361 pi-Stacking: B:W.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reid, T.S. et al., Crystal Structures of the Anticancer Clinical Candidates R115777 (Tipifarnib) and BMS-214662 Complexed with Protein Farnesyltransferase Suggest a Mechanism of FTI Selectivity. Biochemistry (2004)

Release Date

2004-06-08

Peptides

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit: A
Protein farnesyltransferase beta subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit

Protein farnesyltransferase beta subunit

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