- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-pentamer
- Ligands
- 10 x CA: CALCIUM ION(Non-covalent)
CA.1: 7 residues within 4Å:- Chain A: D.58, N.59, E.136, Q.137, D.138
- Ligands: CA.2, ACY.3
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Ligand interactions- Metal complexes: A:D.58, A:D.58, A:E.136, A:E.136, ACY.3
CA.2: 5 residues within 4Å:- Chain A: E.136, D.138, Q.148
- Ligands: CA.1, ACY.3
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.136, A:D.138, A:D.138
CA.4: 6 residues within 4Å:- Chain B: D.58, N.59, E.136, Q.137, D.138
- Ligands: ACY.6
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Ligand interactions- Metal complexes: B:D.58, B:E.136, B:Q.137, B:D.138, ACY.6
CA.5: 4 residues within 4Å:- Chain B: E.136, D.138, Q.148
- Ligands: ACY.6
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.136, B:D.138, B:D.138
CA.7: 6 residues within 4Å:- Chain C: D.58, N.59, E.136, Q.137, D.138
- Ligands: CA.8
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.58, C:D.58, C:E.136, C:E.136, C:D.138
CA.8: 4 residues within 4Å:- Chain C: E.136, D.138, Q.148
- Ligands: CA.7
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:E.136, C:D.138, C:D.138
CA.9: 6 residues within 4Å:- Chain D: D.58, N.59, E.136, Q.137, D.138
- Ligands: ACY.11
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Ligand interactions- Metal complexes: D:D.58, D:D.58, D:E.136, D:E.136, ACY.11
CA.10: 4 residues within 4Å:- Chain D: E.136, D.138, Q.148
- Ligands: ACY.11
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:E.136, D:D.138, D:D.138
CA.12: 6 residues within 4Å:- Chain E: D.58, N.59, E.136, Q.137, D.138
- Ligands: ACY.14
5 PLIP interactions:4 interactions with chain E, 1 Ligand-Ligand interactions- Metal complexes: E:D.58, E:E.136, E:E.136, E:D.138, ACY.14
CA.13: 4 residues within 4Å:- Chain E: E.136, D.138, Q.148
- Ligands: ACY.14
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:E.136, E:D.138, E:D.138
- 4 x ACY: ACETIC ACID(Non-functional Binders)
ACY.3: 8 residues within 4Å:- Chain A: D.58, N.59, L.62, E.136, D.138, Q.148
- Ligands: CA.1, CA.2
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.62
- Hydrogen bonds: A:Q.148
ACY.6: 7 residues within 4Å:- Chain B: D.58, N.59, E.136, D.138, Q.148
- Ligands: CA.4, CA.5
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.59, B:Q.148
ACY.11: 8 residues within 4Å:- Chain D: D.58, N.59, Y.74, E.136, D.138, Q.148
- Ligands: CA.9, CA.10
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.59, D:Q.148, D:Q.148
ACY.14: 8 residues within 4Å:- Chain E: D.58, N.59, Y.74, E.136, D.138, Q.148
- Ligands: CA.12, CA.13
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:N.59, E:Q.148, E:Q.148
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Emsley, J. et al., Structure of pentameric human serum amyloid P component. Nature (1994)
- Release Date
- 1994-05-31
- Peptides
- SERUM AMYLOID P COMPONENT: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-pentamer
- Ligands
- 10 x CA: CALCIUM ION(Non-covalent)
- 4 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Emsley, J. et al., Structure of pentameric human serum amyloid P component. Nature (1994)
- Release Date
- 1994-05-31
- Peptides
- SERUM AMYLOID P COMPONENT: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E