SMTL ID : 1sij.1

Crystal structure of the Aldehyde Dehydrogenase (a.k.a. AOR or MOP) of Desulfovibrio gigas covalently bound to [AsO3]-

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: R.460, L.498, F.532, Y.535, G.536, Q.539 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: Y.892, R.893 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: P.898, E.899 Ligand excluded by PLIP

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 2 residues within 4Å: Chain A: E.899, E.903 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.899, A:E.903, H2O.1, H2O.1, H2O.1 MG.5: 1 residues within 4Å: Chain A: D.572 No protein-ligand interaction detected (PLIP)

1 x PCD: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V)(Non-covalent)

PCD.6: 37 residues within 4Å: Chain A: Q.99, C.139, G.419, T.420, F.421, G.422, A.531, F.532, R.533, W.650, H.653, G.654, Q.655, G.656, A.657, G.660, S.695, G.696, G.697, S.698, R.699, Q.700, Q.701, L.795, S.797, L.798, C.799, N.800, T.804, Q.807, A.864, S.865, G.866, V.867, G.868, E.869 Ligands: AST.7 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Q.701, A:V.867 Hydrogen bonds: A:Q.99, A:T.420, A:F.421, A:H.653, A:Q.655, A:G.656, A:R.699, A:Q.700, A:Q.701, A:Q.701, A:S.797, A:C.799, A:N.800, A:Q.807, A:Q.807, A:V.867, A:G.868, A:E.869 Water bridges: A:R.533

1 x AST: ARSENITE(Non-covalent)

AST.7: 8 residues within 4Å: Chain A: F.425, A.531, Y.535, Y.622, G.696, G.697, E.869 Ligands: PCD.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.622, A:G.697, A:E.869

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.8: 8 residues within 4Å: Chain A: Q.99, C.100, G.101, C.103, C.137, R.138, C.139, I.368 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.100, A:C.103, A:C.137, A:C.139 FES.9: 11 residues within 4Å: Chain A: V.38, G.39, C.40, E.41, G.43, Q.44, C.45, G.46, C.48, R.58, C.60 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.40, A:C.45, A:C.48, A:C.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boer, D.R. et al., X-ray Crystal Structure and EPR Spectra of "Arsenite-Inhibited" Desulfovibriogigas Aldehyde Dehydrogenase: A Member of the Xanthine Oxidase Family. J.Am.Chem.Soc. (2004)

Release Date

2004-07-27

Peptides

Aldehyde oxidoreductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldehyde oxidoreductase

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