- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.3: 9 residues within 4Å:- Chain A: G.97, Q.99, C.100, G.101, C.103, C.137, R.138, C.139, I.368
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.100, A:C.103, A:C.137, A:C.139
FES.4: 11 residues within 4Å:- Chain A: V.38, G.39, C.40, E.41, G.43, Q.44, C.45, G.46, C.48, R.58, C.60
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.40, A:C.45, A:C.48, A:C.60
FES.14: 9 residues within 4Å:- Chain B: G.97, Q.99, C.100, G.101, C.103, C.137, R.138, C.139, I.368
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.100, B:C.103, B:C.137, B:C.139
FES.15: 11 residues within 4Å:- Chain B: V.38, G.39, C.40, E.41, G.43, Q.44, C.45, G.46, C.48, R.58, C.60
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.40, B:C.45, B:C.48, B:C.60
- 2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
IPA.5: 7 residues within 4Å:- Chain A: F.425, R.501, A.531, Y.535, L.626, G.697
- Ligands: PEO.11
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:F.425, A:A.531, A:Y.535, A:Y.535, A:L.626
- Hydrogen bonds: A:G.697
- Water bridges: A:Y.622
IPA.16: 7 residues within 4Å:- Chain B: F.425, R.501, A.531, Y.535, L.626, G.697
- Ligands: PEO.22
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:F.425, B:A.531, B:Y.535, B:Y.535, B:L.626
- Hydrogen bonds: B:G.697
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.6: 9 residues within 4Å:- Chain A: R.460, S.461, L.498, S.530, A.531, F.532, Y.535, G.536, Q.539
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.461, A:F.532, A:F.532
- Water bridges: A:S.461
BCT.17: 9 residues within 4Å:- Chain B: R.460, S.461, L.498, S.530, A.531, F.532, Y.535, G.536, Q.539
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.461, B:F.532, B:F.532
- Water bridges: B:S.461
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.8: 3 residues within 4Å:- Chain A: Y.897, P.898, E.899
Ligand excluded by PLIPCL.9: 2 residues within 4Å:- Chain A: Y.892, R.893
Ligand excluded by PLIPCL.19: 3 residues within 4Å:- Chain B: Y.897, P.898, E.899
Ligand excluded by PLIPCL.20: 2 residues within 4Å:- Chain B: Y.892, R.893
Ligand excluded by PLIP- 2 x PCD: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V)(Non-covalent)
PCD.10: 37 residues within 4Å:- Chain A: Q.99, C.139, G.419, T.420, F.421, G.422, A.531, F.532, R.533, W.650, H.653, G.654, Q.655, G.656, A.657, G.660, S.695, G.696, G.697, S.698, R.699, Q.700, Q.701, L.795, S.797, L.798, C.799, N.800, T.804, Q.807, A.864, S.865, G.866, V.867, G.868, E.869
- Ligands: PEO.11
21 PLIP interactions:21 interactions with chain A- Hydrophobic interactions: A:Q.701, A:V.867
- Hydrogen bonds: A:T.420, A:F.421, A:H.653, A:G.654, A:Q.655, A:G.656, A:R.699, A:Q.700, A:Q.701, A:Q.701, A:S.797, A:C.799, A:N.800, A:Q.807, A:Q.807, A:V.867, A:G.868, A:E.869
- Water bridges: A:R.533
PCD.21: 37 residues within 4Å:- Chain B: Q.99, C.139, G.419, T.420, F.421, G.422, A.531, F.532, R.533, W.650, H.653, G.654, Q.655, G.656, A.657, G.660, S.695, G.696, G.697, S.698, R.699, Q.700, Q.701, L.795, S.797, L.798, C.799, N.800, T.804, Q.807, A.864, S.865, G.866, V.867, G.868, E.869
- Ligands: PEO.22
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:Q.701, B:V.867
- Hydrogen bonds: B:Q.99, B:T.420, B:F.421, B:H.653, B:Q.655, B:G.656, B:R.699, B:Q.700, B:Q.701, B:Q.701, B:S.797, B:C.799, B:N.800, B:Q.807, B:Q.807, B:V.867, B:G.868
- Water bridges: B:R.533
- 2 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)
PEO.11: 6 residues within 4Å:- Chain A: A.531, G.696, G.697, E.869
- Ligands: IPA.5, PCD.10
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.697
PEO.22: 6 residues within 4Å:- Chain B: A.531, G.696, G.697, E.869
- Ligands: IPA.16, PCD.21
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.697
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Marangon, J. et al., Kinetic and Structural Studies of Aldehyde Oxidoreductase from Desulfovibrio Gigas Reveal a Dithiolene-Based Chemistry for Enzyme Activation and Inhibition by H2O2. Plos One (2013)
- Release Date
- 2014-01-15
- Peptides
- ALDEHYDE OXIDOREDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x PCD: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V)(Non-covalent)
- 2 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Marangon, J. et al., Kinetic and Structural Studies of Aldehyde Oxidoreductase from Desulfovibrio Gigas Reveal a Dithiolene-Based Chemistry for Enzyme Activation and Inhibition by H2O2. Plos One (2013)
- Release Date
- 2014-01-15
- Peptides
- ALDEHYDE OXIDOREDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A