SMTL ID : 1soo.1

ADENYLOSUCCINATE SYNTHETASE INHIBITED BY HYDANTOCIDIN 5'-MONOPHOSPHATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: D.13, E.14, G.15, K.16, G.17, G.40, H.41 Ligands: SO4.3, NA.4 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.13, A:E.14, A:G.15, A:K.16, A:G.17 Water bridges: A:G.15, A:T.42 Salt bridges: A:K.16, A:H.41 SO4.2: 5 residues within 4Å: Chain A: R.131, G.298, A.299, R.303, R.305 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.131, A:A.299 Water bridges: A:G.40, A:R.131, A:R.303, A:R.305 Salt bridges: A:R.303, A:R.305 SO4.3: 11 residues within 4Å: Chain A: G.12, D.13, K.16, A.39, G.40, H.41, A.223, Q.224 Ligands: SO4.1, NA.4, H5P.5 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.13, A:D.13, A:G.40, A:Q.224, A:Q.224 Salt bridges: A:K.16, A:H.41 SO4.7: 9 residues within 4Å: Chain B: D.13, E.14, G.15, K.16, G.17, G.40, H.41 Ligands: SO4.9, NA.10 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:D.13, B:D.13, B:E.14, B:G.15, B:K.16, B:G.17 Water bridges: B:G.15, B:T.42 Salt bridges: B:K.16, B:H.41 SO4.8: 5 residues within 4Å: Chain B: R.131, G.298, A.299, R.303, R.305 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:R.131, B:A.299 Water bridges: B:G.40, B:R.131, B:R.303, B:R.305 Salt bridges: B:R.303, B:R.305 SO4.9: 11 residues within 4Å: Chain B: G.12, D.13, K.16, A.39, G.40, H.41, A.223, Q.224 Ligands: SO4.7, NA.10, H5P.11 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.13, B:D.13, B:D.13, B:G.40, B:Q.224, B:Q.224 Salt bridges: B:K.16, B:H.41

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: D.13, G.40 Ligands: SO4.1, SO4.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.13 NA.10: 4 residues within 4Å: Chain B: D.13, G.40 Ligands: SO4.7, SO4.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.13

2 x H5P: HYDANTOCIDIN-5'-PHOSPHATE(Non-covalent)

H5P.5: 14 residues within 4Å: Chain A: N.38, I.126, G.127, T.128, T.129, Q.224, L.228, V.238, T.239, V.273, G.274, R.303 Chain B: R.143 Ligands: SO4.3 20 PLIP interactions: 18 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.38, A:T.129, A:T.129, A:Q.224, A:T.239, A:V.273, A:R.303, A:R.303 Water bridges: A:W.11, A:G.130, A:G.130, A:G.134, A:S.240, A:R.272, A:V.273, A:V.273, A:V.273, B:R.143 pi-Cation interactions: A:R.303 Salt bridges: B:R.143 H5P.11: 14 residues within 4Å: Chain A: R.143 Chain B: N.38, I.126, G.127, T.128, T.129, Q.224, L.228, V.238, T.239, V.273, G.274, R.303 Ligands: SO4.9 21 PLIP interactions: 19 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.38, B:T.129, B:T.129, B:Q.224, B:T.239, B:T.239, B:V.273, B:R.303, B:R.303 Water bridges: B:W.11, B:T.129, B:G.130, B:G.134, B:S.240, B:R.272, B:V.273, B:V.273, B:V.273, A:R.143 pi-Cation interactions: B:R.303 Salt bridges: A:R.143

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.6: 4 residues within 4Å: Chain A: C.291, K.292, F.297, R.304 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.304 BME.12: 4 residues within 4Å: Chain B: C.291, K.292, F.297, R.304 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.304

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fonne-Pfister, R. et al., The mode of action and the structure of a herbicide in complex with its target: binding of activated hydantocidin to the feedback regulation site of adenylosuccinate synthetase. Proc.Natl.Acad.Sci.USA (1996)

Release Date

1997-09-04

Peptides

ADENYLOSUCCINATE SYNTHETASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ADENYLOSUCCINATE SYNTHETASE

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