SMTL ID : 1t3r.1

HIV protease wild-type in complex with TMC114 inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: K.7, R.8, L.10 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Water bridges: B:R.87, A:R.8, A:R.8 Hydrogen bonds: A:R.8 PO4.2: 2 residues within 4Å: Chain A: M.36, N.37 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.37 Water bridges: A:E.35 PO4.3: 3 residues within 4Å: Chain A: K.20, E.21, N.83 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.21, A:N.83 Water bridges: A:K.20, A:E.21 PO4.5: 3 residues within 4Å: Chain B: R.14, G.16, G.17 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.16, B:G.17 Water bridges: B:R.14, B:R.14, B:R.14, B:P.63 Salt bridges: B:R.14 PO4.6: 1 residues within 4Å: Chain B: P.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.1 Water bridges: B:P.1

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.4: 23 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, I.50 Chain B: R.8, L.23, D.25, G.27, A.28, D.30, V.32, G.48, G.49, I.50, P.81, V.82, I.84 19 PLIP interactions: 8 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:L.23, B:L.23, B:A.28, B:V.32, B:P.81, B:V.82, B:I.84 Hydrogen bonds: A:D.25, A:G.27, A:G.27, A:D.29, A:D.30, B:D.29, B:D.30, B:D.30 Water bridges: A:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Surleraux, D.L. et al., Discovery and selection of TMC114, a next generation HIV-1 protease inhibitor. J.Med.Chem. (2005)

Release Date

2005-05-03

Peptides

protease RETROPEPSIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

protease RETROPEPSIN

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