SMTL ID : 1t7j.1

crystal structure of inhibitor amprenavir in complex with a multi-drug resistant variant of HIV-1 protease (L63P/V82T/I84V)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: K.20, M.36, N.37 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:M.36 Hydrogen bonds: A:N.37 ACT.2: 4 residues within 4Å: Chain A: R.14, G.16, G.17, K.70 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.16, A:G.17 Salt bridges: A:R.14, A:K.70 ACT.3: 3 residues within 4Å: Chain A: G.73, T.74, N.88 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.74, A:N.88 Water bridges: A:Q.92, A:Q.92 ACT.5: 3 residues within 4Å: Chain B: K.7, R.8, L.10 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:R.8, B:L.10 Hydrogen bonds: B:R.8

1 x 478: {3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER(Non-covalent)

478.4: 19 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, V.84 Chain B: D.25, G.27, A.28, D.30, V.32, G.48, G.49, I.50, T.82 17 PLIP interactions: 11 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:I.50, A:V.84, B:A.28, B:V.32 Hydrogen bonds: A:G.27, A:G.27, A:G.27, A:D.29, A:D.30, B:D.30, B:D.30 Water bridges: A:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Surleraux, D.L.N.G. et al., Discovery and selection of TMC114, a next generation HIV-1 protease inhibitor. J.Med.Chem. (2005)

Release Date

2005-05-10

Peptides

Pol Polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pol Polyprotein

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