SMTL ID : 1tdn.1

L-amino acid oxidase from Agkistrodon halys in complex with L-leucine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.172, Y.175 No protein-ligand interaction detected (PLIP) NAG.2: 5 residues within 4Å: Chain A: E.337, H.342, N.359, H.360, N.361 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.361, A:N.361

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.3: 36 residues within 4Å: Chain A: V.39, G.40, A.41, G.42, M.43, S.44, L.62, E.63, A.64, G.69, G.70, R.71, V.72, G.87, P.88, M.89, R.90, A.259, Q.260, V.261, C.293, T.294, T.295, A.298, Y.372, W.420, Y.425, G.429, I.430, G.456, E.457, G.464, W.465, I.466, T.469 Ligands: LEU.4 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:Y.372, A:I.430 Hydrogen bonds: A:M.43, A:S.44, A:A.64, A:R.71, A:M.89, A:R.90, A:R.90, A:V.261, A:V.261, A:E.457, A:E.457, A:I.466, A:T.469 Water bridges: A:G.42, A:G.42, A:S.65, A:V.72, A:V.72, A:T.295, A:T.295, A:E.457, A:D.467, A:T.469 Salt bridges: A:R.71, A:R.71

1 x LEU: LEUCINE(Non-covalent)

LEU.4: 8 residues within 4Å: Chain A: R.90, N.208, H.223, F.227, Y.372, I.430, W.465 Ligands: FAD.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.227, A:F.227, A:Y.372 Hydrogen bonds: A:Y.372 Salt bridges: A:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Structures of L-amino acid oxidase in complex with substrates and substrate analogue. To be Published

Release Date

2004-06-22

Peptides

L-amino acid oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L-amino acid oxidase

Related Entries With Identical Sequence