SMTL ID : 1th4.1

crystal structure of NADPH depleted bovine liver catalase complexed with 3-amino-1,2,4-triazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.98 Å

Oligo State

homo-tetramer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)(Non-covalent)

HEM.1: 20 residues within 4Å: Chain A: R.71, V.72, V.73, H.74, R.111, S.113, F.131, A.132, V.145, G.146, G.215, H.217, F.333, M.349, L.350, G.352, R.353, A.356, Y.357 Chain D: M.60 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:R.71, A:V.72, A:V.73, A:V.145, A:V.145, A:R.353, A:R.353, A:A.356 Hydrogen bonds: A:S.113 Salt bridges: A:R.71, A:R.111, A:R.111, A:R.364 pi-Stacking: A:H.74 pi-Cation interactions: A:R.353 Metal complexes: A:Y.357 HEM.2: 22 residues within 4Å: Chain B: R.71, V.72, V.73, H.74, R.111, A.132, V.145, G.146, N.147, F.160, S.216, L.331, A.332, F.333, M.349, R.353, A.356, Y.357, T.360, H.361, R.364 Chain C: M.60 20 PLIP interactions: 20 interactions with chain B, Hydrophobic interactions: B:R.71, B:V.72, B:A.132, B:N.147, B:F.160, B:F.160, B:F.160, B:F.333, B:R.353, B:A.356, B:T.360 Hydrogen bonds: B:F.333 Salt bridges: B:R.71, B:R.71, B:R.111, B:H.361, B:R.364 pi-Stacking: B:H.74 pi-Cation interactions: B:R.353 Metal complexes: B:Y.357 HEM.3: 22 residues within 4Å: Chain B: M.60 Chain C: R.71, V.72, V.73, H.74, R.111, S.113, G.130, F.131, V.145, G.146, N.147, F.152, F.160, F.333, M.349, R.353, A.356, Y.357, T.360, H.361, R.364 24 PLIP interactions: 24 interactions with chain C, Hydrophobic interactions: C:R.71, C:V.72, C:V.73, C:H.74, C:N.147, C:F.152, C:F.152, C:F.160, C:F.160, C:F.160, C:F.160, C:R.353, C:A.356, C:T.360 Hydrogen bonds: C:S.113 Salt bridges: C:R.71, C:R.71, C:R.111, C:H.361, C:R.364 pi-Stacking: C:H.74, C:F.160 pi-Cation interactions: C:R.353 Metal complexes: C:Y.357 HEM.5: 27 residues within 4Å: Chain A: M.60, D.64 Chain D: R.71, V.72, V.73, H.74, R.111, S.113, G.130, F.131, A.132, V.145, G.146, N.147, F.160, S.216, H.217, L.331, F.333, M.349, R.353, A.356, Y.357, T.360, H.361, R.364 Ligands: 3TR.4 20 PLIP interactions: 20 interactions with chain D, Hydrophobic interactions: D:R.71, D:V.72, D:H.74, D:V.145, D:N.147, D:F.160, D:F.160, D:F.333, D:A.356, D:Y.357, D:Y.357 Salt bridges: D:R.71, D:R.71, D:R.111, D:H.361, D:R.364 pi-Stacking: D:H.74, D:F.160 pi-Cation interactions: D:R.353 Metal complexes: D:Y.357

1 x 3TR: 3-AMINO-1,2,4-TRIAZOLE(Covalent)

3TR.4: 7 residues within 4Å: Chain D: V.73, H.74, V.115, N.147, F.152, F.160 Ligands: HEM.5 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugadev, R. et al., crystal structure of bovine liver catalase. TO BE PUBLISHED

Release Date

2005-07-05

Peptides

Catalase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Catalase

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