- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)
- 8 x GD: GADOLINIUM ATOM(Non-covalent)
GD.2: 6 residues within 4Å:- Chain A: A.66, G.67, E.82, E.86
- Ligands: APR.1, GD.3
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:A.66, A:E.86, H2O.1, H2O.2
GD.3: 5 residues within 4Å:- Chain A: R.81, E.82, E.85
- Ligands: APR.1, GD.2
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.82, A:E.82, H2O.2, H2O.2
GD.4: 2 residues within 4Å:- Chain A: E.140, E.143
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.140, A:E.140, A:E.143, A:E.143
GD.5: 1 residues within 4Å:- Chain A: E.122
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.122, A:E.122, H2O.2
GD.7: 6 residues within 4Å:- Chain B: A.66, G.67, E.82, E.86
- Ligands: APR.6, GD.8
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:A.66, B:E.86, H2O.2, H2O.3
GD.8: 5 residues within 4Å:- Chain B: R.81, E.82, E.85
- Ligands: APR.6, GD.7
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.82, B:E.82, H2O.3, H2O.3
GD.9: 2 residues within 4Å:- Chain B: E.140, E.143
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.140, B:E.140, B:E.143, B:E.143
GD.10: 1 residues within 4Å:- Chain B: E.122
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.122, B:E.122, H2O.3
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshiba, S. et al., Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal. J.Biol.Chem. (2004)
- Release Date
- 2004-10-19
- Peptides
- ADP-ribose pyrophosphatase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)
- 8 x GD: GADOLINIUM ATOM(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshiba, S. et al., Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal. J.Biol.Chem. (2004)
- Release Date
- 2004-10-19
- Peptides
- ADP-ribose pyrophosphatase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A