- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.22 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)
- 6 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 4 residues within 4Å:- Chain A: A.66, E.86
- Ligands: AR6.1, MN.3
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:A.66, A:E.86, H2O.1, H2O.1, H2O.4
MN.3: 4 residues within 4Å:- Chain A: E.82, E.86
- Ligands: AR6.1, MN.2
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.82, A:E.86, H2O.1
MN.4: 1 residues within 4Å:- Chain A: I.131
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:I.131, H2O.3, H2O.3, H2O.4
MN.8: 4 residues within 4Å:- Chain B: A.66, E.86
- Ligands: AR6.7, MN.9
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:A.66, B:E.86, H2O.5, H2O.5, H2O.9
MN.9: 4 residues within 4Å:- Chain B: E.82, E.86
- Ligands: AR6.7, MN.8
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.82, B:E.86, H2O.5
MN.10: 1 residues within 4Å:- Chain B: I.131
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:I.131, H2O.8, H2O.8, H2O.8
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 8 residues within 4Å:- Chain A: G.17, R.18, I.19, L.20, N.21, E.32, H.33, K.34
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.17, A:K.34, A:K.34
- Water bridges: A:H.33, A:K.34
GOL.11: 8 residues within 4Å:- Chain B: G.17, R.18, I.19, L.20, N.21, E.32, H.33, K.34
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.17, B:K.34, B:K.34
- Water bridges: B:H.33, B:K.34
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 3 residues within 4Å:- Chain A: R.51, R.144, E.149
8 PLIP interactions:8 interactions with chain A- Water bridges: A:R.51, A:R.51, A:R.51, A:R.51, A:R.144, A:R.144
- Salt bridges: A:R.51, A:R.144
SO4.12: 3 residues within 4Å:- Chain B: R.51, R.144, E.149
8 PLIP interactions:8 interactions with chain B- Water bridges: B:R.51, B:R.51, B:R.51, B:R.51, B:R.144, B:R.144
- Salt bridges: B:R.51, B:R.144
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Furuike, Y. et al., ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors. Biochemistry (2016)
- Release Date
- 2016-04-27
- Peptides
- ADP-ribose pyrophosphatase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.22 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)
- 6 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Furuike, Y. et al., ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors. Biochemistry (2016)
- Release Date
- 2016-04-27
- Peptides
- ADP-ribose pyrophosphatase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A