- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.15 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain A: R.51, R.144, E.149
4 PLIP interactions:4 interactions with chain A- Water bridges: A:R.51, A:R.51
- Salt bridges: A:R.51, A:R.144
SO4.3: 6 residues within 4Å:- Chain A: R.54, A.66, G.67, L.68
- Ligands: GOL.4, MN.5
11 PLIP interactions:10 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:L.68
- Water bridges: A:Q.52, A:Q.52, A:Q.52, A:R.54, A:R.54, A:R.54, A:A.66, A:A.66, B:G.104
- Salt bridges: A:R.54
SO4.8: 3 residues within 4Å:- Chain B: R.51, R.144, E.149
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.51, B:R.144
SO4.9: 6 residues within 4Å:- Chain B: R.54, A.66, G.67, L.68
- Ligands: GOL.10, MN.11
11 PLIP interactions:1 interactions with chain A, 10 interactions with chain B- Water bridges: A:G.104, B:Q.52, B:Q.52, B:Q.52, B:R.54, B:R.54, B:R.54, B:A.66, B:A.66
- Hydrogen bonds: B:L.68
- Salt bridges: B:R.54
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.5: 4 residues within 4Å:- Chain A: Q.52, A.66, E.86
- Ligands: SO4.3
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:A.66, A:E.86, H2O.1, H2O.2, H2O.3
MN.6: 1 residues within 4Å:- Chain A: I.131
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:I.131, H2O.3, H2O.3
MN.11: 4 residues within 4Å:- Chain B: Q.52, A.66, E.86
- Ligands: SO4.9
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:A.66, B:E.86, H2O.6, H2O.8, H2O.9
MN.12: 1 residues within 4Å:- Chain B: I.131
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:I.131, H2O.9, H2O.9
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Furuike, Y. et al., ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors. Biochemistry (2016)
- Release Date
- 2016-04-27
- Peptides
- ADP-ribose pyrophosphatase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.15 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Furuike, Y. et al., ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors. Biochemistry (2016)
- Release Date
- 2016-04-27
- Peptides
- ADP-ribose pyrophosphatase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A