SMTL ID : 1wb1.1 (3 other biounits)

CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR SELB FROM METHANOCOCCUS MARIPALUDIS IN COMPLEX WITH GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 14 residues within 4Å: Chain A: I.28, D.29, H.30, G.31, K.32, T.33, T.34, K.134, D.136, S.169, A.170, K.171 Ligands: MG.2, SO4.3 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:H.27, A:D.29, A:G.31, A:K.32, A:T.33, A:T.33, A:T.33, A:T.34, A:T.34, A:K.134, A:K.134, A:N.137, A:A.170, A:K.171 Salt bridges: A:K.32, A:D.136

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: K.32, T.33 Ligands: GDP.1, SO4.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.33

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: T.33, P.81 Ligands: GDP.1, MG.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.33, A:T.33 Salt bridges: A:K.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leibundgut, M. et al., Selenocysteine tRNA-Specific Elongation Factor Selb is a Structural Chimaera of Elongation and Initiation Factors. Embo J. (2005)

Release Date

2005-01-04

Peptides

TRANSLATION ELONGATION FACTOR SELB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TRANSLATION ELONGATION FACTOR SELB

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