SMTL ID : 4acb.3 (3 other biounits)

CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR SELB FROM METHANOCOCCUS MARIPALUDIS IN COMPLEX WITH THE GTP ANALOGUE GPPNHP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.34 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: D.122, H.123, K.298, I.299, S.300, D.301 Ligands: SO4.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.122, A:D.301, A:D.301 Salt bridges: A:H.123, A:K.298 SO4.2: 4 residues within 4Å: Chain A: H.158, K.161, D.301 Ligands: SO4.1 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.158, A:K.161 SO4.3: 2 residues within 4Å: Chain A: R.479, R.480 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.480 Salt bridges: A:K.432, A:R.479 SO4.10: 1 residues within 4Å: Ligands: DXC.9 No protein-ligand interaction detected (PLIP)

6 x DXC: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID(Non-covalent)

DXC.4: 11 residues within 4Å: Chain A: I.61, D.62, I.63, G.64, F.65, S.66, V.216, S.245, Q.247, G.263, M.264 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.61, A:I.63, A:I.63, A:V.216, A:V.216, A:Q.247 Hydrogen bonds: A:I.63, A:G.64, A:F.65, A:S.245, A:S.245, A:Q.247 DXC.5: 4 residues within 4Å: Chain A: R.12, P.13, H.14, M.15 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:M.15 Hydrogen bonds: A:M.15 DXC.6: 8 residues within 4Å: Chain A: P.110, T.112, G.115, R.145, I.153, K.304, T.380, L.382 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.112, A:I.153, A:L.382 Hydrogen bonds: A:K.304 Salt bridges: A:R.145 DXC.7: 7 residues within 4Å: Chain A: S.135, D.136, A.138, T.140, I.143, T.172, F.174 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.136, A:F.174, A:F.174, A:F.174 DXC.8: 5 residues within 4Å: Chain A: T.140, I.143, K.144, E.147, F.174 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.143 DXC.9: 8 residues within 4Å: Chain A: D.301, F.303, K.304, Y.305, E.345, I.347, S.348 Ligands: SO4.10 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.347 Hydrogen bonds: A:K.304, A:E.345

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leibundgut, M. et al., Selenocysteine tRNA-Specific Elongation Factor Selb is a Structural Chimaera of Elongation and Initiation Factors. Embo J. (2005)

Release Date

2012-11-07

Peptides

TRANSLATION ELONGATION FACTOR SELB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

TRANSLATION ELONGATION FACTOR SELB

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